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contig_metadata

8 rows where bioproject = "PRJEB7366", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 8 ✖

tax_clade 1

bioproject 1

  • PRJEB7366 · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6513361 6513361 PRJEB7366_P_NODE_23166_length_156_cov_1.322314_g22732_i0 PRJEB7366 23166 156 1.322314 2.06280984 Thalassiosira pseudonana 35128 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.013   NTclustered gi|224002880|ref|XM_002291076.1| 296543 g22732 i0 100 0.179487179487179 28 0 18 0 3 30 1513 1540 Thalassiosira pseudonana CCMP1335 predicted protein mRNA blastn 28 52.8 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira pseudonana
17573449 17573449 PRJEB7366_P_NODE_20574_length_167_cov_2.121212_g20140_i0 PRJEB7366 20574 167 2.121212 3.54242404 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 96.7 5.2699999999999997e-23   NR KAI2492184.1 210448 g20140 i0 70.9 6.91616766467066 55 16 98.8 0 2 166 95 149 KAI2492184.1 hypothetical protein MHU86_22380 [Fragilaria crotonensis] diamond 1155 97.4 0.992813141683778 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis
19260850 19260850 PRJEB7366_P_NODE_22716_length_158_cov_1.300813_g22282_i0 PRJEB7366 22716 158 1.300813 2.05528454 Skeletonema marinoi 267567 SAR_Eukaryotes SAR_Eukaryotes 84.7 1.86e-17   NR KAK1747007.1 267567 g22282 i0 75 6.91139240506329 52 13 98.7 0 3 158 478 529 KAK1747007.1 coatomer subunit gamma [Skeletonema marinoi] diamond 1092 84.7 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Skeletonemataceae Skeletonema Skeletonema marinoi
27761018 27761018 PRJEB7366_P_NODE_10584_length_253_cov_1.949541_g10150_i0 PRJEB7366 10584 253 1.949541 4.93233873 Cylindrotheca closterium 2856 SAR_Eukaryotes SAR_Eukaryotes 109 5.26e-29   NR CAJ1946380.1 2856 g10150 i0 58.5 1.94466403162055 82 34 97.2 0 252 7 24 105 CAJ1946380.1 unnamed protein product [Cylindrotheca closterium] diamond 492 109 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Cylindrotheca Cylindrotheca closterium
29781419 29781419 PRJEB7366_P_NODE_18011_length_181_cov_1.095890_g17577_i0 PRJEB7366 18011 181 1.09589 1.9835609 Cylindrotheca closterium 2856 SAR_Eukaryotes SAR_Eukaryotes 55.8 3.65e-7   NR CAJ1950604.1 2856 g17577 i0 64.3 0.696132596685083 42 15 69.6 0 128 3 257 298 CAJ1950604.1 unnamed protein product [Cylindrotheca closterium] diamond 126 55.8 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Cylindrotheca Cylindrotheca closterium
30034268 30034268 PRJEB7366_P_NODE_22571_length_159_cov_0.951613_g22137_i0 PRJEB7366 22571 159 0.951613 1.51306467 Mayamaea pseudoterrestris 2872254 SAR_Eukaryotes SAR_Eukaryotes 53.5 1.88e-6   NR GKZ01138.1 2872254 g22137 i0 54.7 1 53 23 98.1 1 159 4 155 207 GKZ01138.1 hypothetical protein MPSEU_001065300 [Mayamaea pseudoterrestris] diamond 159 53.5 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Mayamaea Mayamaea pseudoterrestris
30943332 30943332 PRJEB7366_P_NODE_17374_length_185_cov_1.066667_g16940_i0 PRJEB7366 17374 185 1.066667 1.97333395 Fragilariopsis 186035 SAR_Eukaryotes SAR_Eukaryotes 54.3 1.43e-6   NR OEU15157.1 635003 g16940 i0 44.4 3.43783783783784 54 30 87.6 0 24 185 568 621 OEU15157.1 putative cysteinyl-tRNA synthetase [Fragilariopsis cylindrus CCMP1102] diamond 636 54.3 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Fragilariopsis Fragilariopsis cylindrus
31582902 31582902 PRJEB7366_P_NODE_4696_length_423_cov_3.394330_g4264_i0 PRJEB7366 4696 423 3.39433 14.3580159 Phaeodactylum tricornutum CCAP 1 2850 SAR_Eukaryotes SAR_Eukaryotes 186 2.1299999999999995e-55   NR XP_002183747.1 556484 g4264 i0 64.4 4.83687943262411 135 48 95.7 0 421 17 188 322 XP_002183747.1 3-hydroxyacyl-coenzyme A dehydrogenase [Phaeodactylum tricornutum CCAP 1055/1] diamond 2046 186 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;