RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB7366", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJEB7366 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16711936 16711936 PRJEB7366_P_NODE_22274_length_160_cov_0.968000_g21840_i0 PRJEB7366 22274 160 0.968 1.5488 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 278 2.01e-70   NTclustered gi|971146634|emb|LN879502.1| 389348 g21840 i0 98.718 186.80625 156 2 98 0 5 160 1249302 1249147 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 29889 278 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
21812057 21812057 PRJEB7366_P_NODE_8378_length_294_cov_1.841699_g7944_i0 PRJEB7366 8378 294 1.841699 5.41459506 uncultured Chlamydiales bacterium 174324 Bacteria Bacteria 488 1.7499999999999996e-133   NTclustered gi|18029193|gb|AF364564.1| 174324 g7944 i0 96.61 98.9081632653061 295 8 100 2 1 294 492 785 Uncultured Chlamydiales bacterium clone P-4 16S ribosomal RNA gene, partial sequence blastn 29079 488 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     uncultured Chlamydiales bacterium
26590643 26590643 PRJEB7366_P_NODE_16721_length_189_cov_1.610390_g16287_i0 PRJEB7366 16721 189 1.61039 3.0436371 Candidatus Protochlamydia phocaeensis 1414722 Bacteria Bacteria 55.5 6.02e-7   NR WP_068469007.1 1414722 g16287 i0 66.7 0.571428571428571 36 12 57.1 0 189 82 499 534 WP_068469007.1 ADP-ribosylhydrolase MavL family protein [Candidatus Protochlamydia phocaeensis] diamond 108 55.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia phocaeensis
32240116 32240116 PRJEB7366_P_NODE_16218_length_193_cov_1.012658_g15784_i0 PRJEB7366 16218 193 1.012658 1.95442994 Bacteria 2 Bacteria Bacteria 79.7 1.74e-15   NR MCE2983920.1 2052048 g15784 i0 60 2.82901554404145 60 24 93.3 0 185 6 1533 1592 MCE2983920.1 retroviral-like aspartic protease family protein [Parachlamydia sp.] diamond 546 79.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;