RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB7366", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJEB7366 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26844494 26844494 PRJEB7366_P_NODE_16221_length_193_cov_1.012658_g15787_i0 PRJEB7366 16221 193 1.012658 1.95442994 Chlorobiota bacterium 2268192 Bacteria Bacteria 69.7 5.97e-12   NR NPA46824.1 2268192 g15787 i0 51.7 1.86528497409326 60 29 93.3 0 1 180 57 116 NPA46824.1 AMP-binding protein [Chlorobiota bacterium] diamond 360 69.7 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
28511291 28511291 PRJEB7366_P_NODE_20287_length_169_cov_1.186567_g19853_i0 PRJEB7366 20287 169 1.186567 2.00529823 Chlorobaculum 256319 Bacteria Bacteria 57 2.88e-8   NR WP_012502406.1 274539 g19853 i0 48 9.01775147928994 50 26 88.8 0 3 152 67 116 WP_012502406.1 SET domain-containing protein [Chlorobaculum parvum] diamond 1524 57 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum parvum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;