RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB73599" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB73599 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8648648 8648648 PRJEB73599_P_NODE_4147_length_336_cov_6.241042_g3860_i0 PRJEB73599 4147 336 6.241042 20.96990112 Aliarcobacter 2321111 Bacteria Bacteria 621 1.9299999999999997e-173   NTclustered gi|290877936|emb|FN600702.1| 28198 g3860 i0 100 381.279761904762 336 0 100 0 1 336 628 293 Arcobacter cryaerophilus partial 23S rRNA gene, strain LMG 10209, biovar 1B blastn 128110 621 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus
20122032 20122032 PRJEB73599_P_NODE_5716_length_261_cov_7.168103_g5429_i0 PRJEB73599 5716 261 7.168103 18.70874883 Arcobacteraceae 2808963 Bacteria Bacteria 442 1.2099999999999994e-119   NTclustered gi|1898123824|gb|CP060693.1| 28198 g5429 i0 97.328 423.111111111111 262 4 100 3 1 261 71460 71201 Aliarcobacter cryaerophilus strain 16CS1285-4 chromosome, complete genome blastn 110432 442 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus
25221648 25221648 PRJEB73599_P_NODE_4740_length_304_cov_9.530909_g4453_i0 PRJEB73599 4740 304 9.530909 28.97396336 Aliarcobacter 2321111 Bacteria Bacteria 479 1.1e-130   NTclustered gi|1898123824|gb|CP060693.1| 28198 g4453 i0 95.066 384.026315789474 304 15 100 0 1 304 69653 69350 Aliarcobacter cryaerophilus strain 16CS1285-4 chromosome, complete genome blastn 116744 479 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;