RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJEB73599" and tax_kingdom = "Thermotogati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 8 ✖

bioproject 1

  • PRJEB73599 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
135203 135203 PRJEB73599_P_NODE_721_length_891_cov_4068.633411_g579_i0 PRJEB73599 721 891 4068.633411 36251.52369201 Deinococcus actinosclerus 1768108 Bacteria Bacteria 907 0   NTclustered gi|972944657|gb|CP013910.1| 1768108 g579 i0 91.029 248.750841750842 680 49 76 12 218 891 74386 73713 Deinococcus actinosclerus strain BM2 chromosome, complete genome blastn 221637 907 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus actinosclerus
995517 995517 PRJEB73599_P_NODE_6281_length_241_cov_3.693396_g5994_i0 PRJEB73599 6281 241 3.693396 8.90108436 Deinococcus 1298 Bacteria Bacteria 396 8.7e-106   NTclustered gi|1751871007|dbj|AP021849.1| 57498 g5994 i0 96.266 208.771784232365 241 9 100 0 1 241 74120 74360 Deinococcus grandis ATCC 43672 DNA, complete genome blastn 50314 396 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis
3961302 3961302 PRJEB73599_P_NODE_7324_length_209_cov_2.455556_g7037_i0 PRJEB73599 7324 209 2.455556 5.13211204 Thermus aquaticus 271 Bacteria Bacteria 377 2.66e-100   NTclustered gi|939575972|gb|CP010822.1| 498848 g7037 i0 99.517 147.732057416268 207 1 99 0 1 207 44326 44532 Thermus aquaticus Y51MC23, complete genome blastn 30876 377 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus
9062472 9062472 PRJEB73599_P_NODE_7488_length_204_cov_2.394286_g7201_i0 PRJEB73599 7488 204 2.394286 4.88434344 Deinococcus gobiensis 502394 Bacteria Bacteria 361 2.6e-95   NTclustered gi|379998737|gb|CP002191.1| 745776 g7201 i0 98.529 369.279411764706 204 3 100 0 1 204 112036 111833 Deinococcus gobiensis I-0, complete genome blastn 75333 361 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus gobiensis
17573432 17573432 PRJEB73599_P_NODE_7354_length_208_cov_2.122905_g7067_i0 PRJEB73599 7354 208 2.122905 4.4156424 Bacteria 2 Bacteria Bacteria 143 1.05e-29   NTclustered gi|37223182|gb|AY379549.1| 274 g7067 i0 84.459 96.7692307692308 148 19 71 4 56 202 1465 1321 Thermus thermophilus TT700 23S ribosomal RNA, 5S ribosomal RNA, and tRNA-Gly genes, complete sequence blastn 20128 143 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus thermophilus
19260744 19260744 PRJEB73599_P_NODE_1236_length_675_cov_7.148607_g1044_i0 PRJEB73599 1236 675 7.148607 48.25309725 Deinococcus soli (ex Cha et al. 2016) 1309411 Bacteria Bacteria 968 0   NTclustered gi|821341785|gb|CP011389.1| 1309411 g1044 i0 92.522 284.536296296296 682 41 100 10 1 675 1637231 1637909 'Deinococcus soli' Cha et al. 2014 strain N5, complete genome blastn 192062 968 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus soli (ex Cha et al. 2016)
23948025 23948025 PRJEB73599_P_NODE_8119_length_189_cov_2.243750_g7832_i0 PRJEB73599 8119 189 2.24375 4.2406875 root 1 Root_unresolved Root_unresolved 350 5.14e-92   NTclustered gi|219846310|ref|NR_025900.1| 271 g7832 i0 100 100.957671957672 189 0 100 0 1 189 738 550 Thermus aquaticus strain YT-1 16S ribosomal RNA, partial sequence blastn 19081 350 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus
29268853 29268853 PRJEB73599_P_NODE_5409_length_274_cov_2.232653_g5122_i0 PRJEB73599 5409 274 2.232653 6.11746922 Bacteria 2 Bacteria Bacteria 67.4 1e-10   NR WP_287928134.1 275 g5122 i0 62.3 6.86496350364964 53 20 58 0 115 273 19 71 WP_287928134.1 oxaloacetate-decarboxylating malate dehydrogenase, partial [Thermus sp.] diamond 1881 67.8 0.994100294985251 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;