RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB73599", tax_clade = "Opisthokonta" and tax_phylum = "Cnidaria"

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tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJEB73599 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5237737 5237737 PRJEB73599_P_NODE_5245_length_281_cov_2.928571_g4958_i0 PRJEB73599 5245 281 2.928571 8.22928451 Clytia hemisphaerica 252671 Cnidaria other_Eukaryota 209 1.45e-49   NTclustered gi|2782844603|ref|XM_067056021.1| 252671 g4958 i0 81.061 41.5658362989324 264 48 94 2 15 277 96 358 PREDICTED: Clytia hemisphaerica tubulin beta-4B chain (LOC136799316), mRNA blastn 11680 209 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Leptothecata Clytiidae Clytia Clytia hemisphaerica
13748928 13748928 PRJEB73599_P_NODE_6751_length_226_cov_3.360406_g6464_i0 PRJEB73599 6751 226 3.360406 7.59451756 Plexauridae 44191 Cnidaria other_Eukaryota 89.8 1.53e-13   NTclustered gi|2689317080|gb|PP410637.1| 1329949 g6464 i0 91.935 3.2787610619469 62 5 27 0 2 63 3580 3519 Swiftia koreni voucher USNM:55966 large subunit ribosomal RNA gene, partial sequence blastn 741 89.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Malacalcyonacea Plexauridae Swiftia Swiftia koreni
17986749 17986749 PRJEB73599_P_NODE_4235_length_332_cov_1.706271_g3948_i0 PRJEB73599 4235 332 1.706271 5.66481972 Polypodium hydriforme 43186 Cnidaria other_Eukaryota 54.7 0.009   NTclustered gi|2663986578|emb|OY756919.1| 43186 g3948 i0 100 0.0873493975903614 29 0 9 0 79 107 6126 6154 Polypodium hydriforme genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA complete sequences blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Cnidaria Polypodiozoa Polypodiidea Polypodiidae Polypodium Polypodium hydriforme
23086994 23086994 PRJEB73599_P_NODE_6439_length_236_cov_2.966184_g6152_i0 PRJEB73599 6439 236 2.966184 7.00019424 Myxidium coryphaenoideum 371538 Cnidaria other_Eukaryota 121 5.72e-23   NTclustered gi|241911754|gb|FJ417060.1| 371538 g6152 i0 86.486 15.4110169491525 111 14 47 1 19 129 392 283 Myxidium coryphaenoideum isolate M0409 28S large subunit ribosomal RNA gene, partial sequence blastn 3637 121 1 Eukaryota Opisthokonta Metazoa Cnidaria Myxozoa Bivalvulida Myxidiidae Myxidium Myxidium coryphaenoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;