RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB73599", tax_clade = "CRuMs" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_clade 1

  • CRuMs · 3 ✖

bioproject 1

  • PRJEB73599 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3961310 3961310 PRJEB73599_P_NODE_8364_length_183_cov_3.396104_g8077_i0 PRJEB73599 8364 183 3.396104 6.21487032 Rigifila ramosa 1122280 Root_unresolved Root_unresolved 180 6.85e-41   NTclustered gi|390124887|dbj|AB686267.1| 1122280 g8077 i0 94.828 5.83606557377049 116 4 62 1 70 183 1678 1793 Rigifila ramosa gene for large subunit ribosomal RNA, partial sequence, strain: YPF923 blastn 1068 180 1 Eukaryota CRuMs       Rigifilida   Rigifila Rigifila ramosa
3961314 3961314 PRJEB73599_P_NODE_8864_length_173_cov_3.263889_g8577_i0 PRJEB73599 8864 173 3.263889 5.64652797 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 95.3 2.38e-15   NTclustered gi|300078503|gb|GU001165.1| 238746 g8577 i0 88.889 0.416184971098266 72 8 42 0 32 103 4432 4361 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 72 95.3 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
5237749 5237749 PRJEB73599_P_NODE_6805_length_225_cov_2.198980_g6518_i0 PRJEB73599 6805 225 2.19898 4.947705 Rigifila ramosa 1122280 Root_unresolved Root_unresolved 104 5.45e-18   NTclustered gi|390124887|dbj|AB686267.1| 1122280 g6518 i0 89.412 19.9288888888889 85 6 66 2 141 225 3355 3274 Rigifila ramosa gene for large subunit ribosomal RNA, partial sequence, strain: YPF923 blastn 4484 104 1 Eukaryota CRuMs       Rigifilida   Rigifila Rigifila ramosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;