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contig_metadata

10 rows where bioproject = "PRJEB73599", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 10 ✖

tax_clade 1

  • Amoebozoa · 10 ✖

bioproject 1

  • PRJEB73599 · 10 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2685242 2685242 PRJEB73599_P_NODE_2823_length_433_cov_3.841584_g2544_i0 PRJEB73599 2823 433 3.841584 16.63405872 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 492 2.0799999999999995e-134   NTclustered gi|511487963|gb|JX898537.1| 1260765 g2544 i0 87.471 37.7528868360277 431 48 99 6 1 428 66 493 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 16347 492 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
2685282 2685282 PRJEB73599_P_NODE_823_length_834_cov_31.795031_g407_i1 PRJEB73599 823 834 31.795031 265.17055854 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 1083 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g407 i1 99.662 126.717026378897 592 2 71 0 243 834 1206 1797 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 105682 1083 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5237772 5237772 PRJEB73599_P_NODE_9225_length_167_cov_1.702899_g8938_i0 PRJEB73599 9225 167 1.702899 2.84384133 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 211 2.18e-50   NTclustered gi|909719645|gb|KT185625.1| 5778 g8938 i0 91.083 0.940119760479042 157 12 94 2 1 157 472 626 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 157 211 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
6513262 6513262 PRJEB73599_P_NODE_3466_length_381_cov_28.218750_g3180_i0 PRJEB73599 3466 381 28.21875 107.5134375 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 671 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g3180 i0 98.425 35.7296587926509 381 6 100 0 1 381 6720 7100 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 13613 671 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
12474458 12474458 PRJEB73599_P_NODE_5690_length_262_cov_13.725322_g5403_i0 PRJEB73599 5690 262 13.725322 35.96034364 Tubulinea 555369 Tubulinea other_Eukaryota 484 1.99e-132   NTclustered gi|421976371|gb|JQ519505.1| 5778 g5403 i0 100 99.9923664122137 262 0 100 0 1 262 126 387 Vermamoeba vermiformis clone JG10.99 18S ribosomal RNA gene, partial sequence blastn 26198 484 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
12888768 12888768 PRJEB73599_P_NODE_8411_length_182_cov_9.496732_g8124_i0 PRJEB73599 8411 182 9.496732 17.28405224 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 296 6.48e-76   NTclustered gi|46393848|gb|AY502960.1| 5778 g8124 i0 100 87.8791208791209 160 0 88 0 1 160 1819 1660 Hartmannella vermiformis isolate KWR-2 18S ribosomal RNA gene, partial sequence blastn 15994 296 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
17573438 17573438 PRJEB73599_P_NODE_9114_length_169_cov_2.114286_g8827_i0 PRJEB73599 9114 169 2.114286 3.57314334 Hartmannellidae 5776 Tubulinea other_Eukaryota 302 1.27e-77   NTclustered gi|24527245|gb|AY145442.1| 211864 g8827 i0 98.817 17.4319526627219 169 2 100 0 1 169 248 416 Hartmannellidae sp. LOS7N/I small subunit ribosomal RNA gene, complete sequence blastn 2946 302 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae   Hartmannellidae sp. LOS7N/I
20122017 20122017 PRJEB73599_P_NODE_3716_length_363_cov_28.356287_g3430_i0 PRJEB73599 3716 363 28.356287 102.93332181 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 671 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g3430 i0 100 54.5619834710744 363 0 100 0 1 363 872 1234 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 19806 671 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20536115 20536115 PRJEB73599_P_NODE_9177_length_168_cov_1.899281_g8890_i0 PRJEB73599 9177 168 1.899281 3.19079208 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 311 2.11e-80   NTclustered gi|292559443|ref|NC_013986.1| 5778 g8890 i0 100 41.3035714285714 168 0 100 0 1 168 19372 19205 Hartmannella vermiformis mitochondrion, complete genome blastn 6939 311 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
25221636 25221636 PRJEB73599_P_NODE_1540_length_598_cov_36.117750_g1322_i0 PRJEB73599 1540 598 36.11775 215.984145 Vermamoeba 1260114 Tubulinea other_Eukaryota 1048 0   NTclustered gi|2777861736|gb|PQ072230.1| 5778 g1322 i0 97.826 83.061872909699 598 12 100 1 1 598 902 306 Vermamoeba vermiformis strain CCAP_1534_12_consensus_sequence small subunit ribosomal RNA gene, partial sequence blastn 49671 1048 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;