RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJEB73599", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 8 ✖

tax_clade 1

  • Amoebozoa · 8 ✖

bioproject 1

  • PRJEB73599 · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
135175 135175 PRJEB73599_P_NODE_3341_length_391_cov_9.439227_g3055_i0 PRJEB73599 3341 391 9.439227 36.90737757 Vannella septentrionalis 197531 Discosea other_Eukaryota 532 1.0999999999999996e-146   NTclustered gi|300078499|gb|GU001161.1| 197531 g3055 i0 91.184 60.8746803069054 397 28 100 3 1 391 2816 2421 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 23802 532 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
1409769 1409769 PRJEB73599_P_NODE_5282_length_279_cov_10.144000_g4995_i0 PRJEB73599 5282 279 10.144 28.30176 Vannella sp. ELH6 1215641 Discosea other_Eukaryota 444 3.63e-120   NTclustered gi|399764226|gb|JQ271737.1| 1215641 g4995 i0 96.31 91.1720430107527 271 9 97 1 9 279 828 1097 Vannella sp. ELH6 18S ribosomal RNA gene, partial sequence blastn 25437 444 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. ELH6
7787558 7787558 PRJEB73599_P_NODE_5947_length_253_cov_2.535714_g5660_i0 PRJEB73599 5947 253 2.535714 6.41535642 Vannella septentrionalis 197531 Discosea other_Eukaryota 250 7.58e-62   NTclustered gi|300078499|gb|GU001161.1| 197531 g5660 i0 84.674 48.1067193675889 261 28 100 11 1 253 915 1171 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 12171 250 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
17573426 17573426 PRJEB73599_P_NODE_5914_length_254_cov_3.355556_g5627_i0 PRJEB73599 5914 254 3.355556 8.52311224 Cochliopodium 313557 Discosea other_Eukaryota 431 2.539999999999999e-116   NTclustered gi|399764162|gb|JQ271673.1| 313997 g5627 i0 96.923 42.503937007874 260 2 100 4 1 254 727 986 Cochliopodium minus strain UKNCC:CCAP1537/1 18S ribosomal RNA gene, partial sequence blastn 10796 431 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
20536075 20536075 PRJEB73599_P_NODE_3177_length_403_cov_8.029412_g2891_i0 PRJEB73599 3177 403 8.029412 32.35853036 Cochliopodium sp. JvW-2015 1678068 Discosea other_Eukaryota 580 3.9899999999999985e-161   NTclustered gi|861554067|gb|KP719191.1| 1678068 g2891 i0 93.798 58.3349875930521 387 23 96 1 18 403 418 32 Cochliopodium sp. JvW-2015 strain A1HEB clone 1 small subunit ribosomal RNA gene, partial sequence blastn 23509 580 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium sp. JvW-2015
21397649 21397649 PRJEB73599_P_NODE_4037_length_343_cov_2.429936_g3750_i0 PRJEB73599 4037 343 2.429936 8.33468048 Cochliopodium 313557 Discosea other_Eukaryota 359 1.7099999999999998e-94   NTclustered gi|399764162|gb|JQ271673.1| 313997 g3750 i0 92.4 33.064139941691 250 12 96 3 2 250 12 255 Cochliopodium minus strain UKNCC:CCAP1537/1 18S ribosomal RNA gene, partial sequence blastn 11341 359 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
23086998 23086998 PRJEB73599_P_NODE_7079_length_216_cov_4.770053_g6792_i0 PRJEB73599 7079 216 4.770053 10.30331448 Vannella septentrionalis 197531 Discosea other_Eukaryota 220 4.94e-53   NTclustered gi|300078499|gb|GU001161.1| 197531 g6792 i0 85.238 0.972222222222222 210 27 97 4 8 216 4355 4149 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 210 220 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
29497255 29497255 PRJEB73599_P_NODE_4370_length_325_cov_2.388514_g4083_i0 PRJEB73599 4370 325 2.388514 7.7626705 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 180 7.04e-53   NR XP_004336605.1 1257118 g4083 i0 80.2 7.84615384615385 106 21 97.8 0 320 3 176 281 XP_004336605.1 atpdependent rna helicase ddx6, putative [Acanthamoeba castellanii str. Neff] diamond 2550 180 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;