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contig_metadata

28 rows where bioproject = "PRJEB73599" and tax_clade = "Amoebozoa"

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tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 28 ✖

bioproject 1

  • PRJEB73599 · 28 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
135175 135175 PRJEB73599_P_NODE_3341_length_391_cov_9.439227_g3055_i0 PRJEB73599 3341 391 9.439227 36.90737757 Vannella septentrionalis 197531 Discosea other_Eukaryota 532 1.0999999999999996e-146   NTclustered gi|300078499|gb|GU001161.1| 197531 g3055 i0 91.184 60.8746803069054 397 28 100 3 1 391 2816 2421 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 23802 532 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
1409769 1409769 PRJEB73599_P_NODE_5282_length_279_cov_10.144000_g4995_i0 PRJEB73599 5282 279 10.144 28.30176 Vannella sp. ELH6 1215641 Discosea other_Eukaryota 444 3.63e-120   NTclustered gi|399764226|gb|JQ271737.1| 1215641 g4995 i0 96.31 91.1720430107527 271 9 97 1 9 279 828 1097 Vannella sp. ELH6 18S ribosomal RNA gene, partial sequence blastn 25437 444 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. ELH6
1409791 1409791 PRJEB73599_P_NODE_7262_length_211_cov_2.873626_g6975_i0 PRJEB73599 7262 211 2.873626 6.06335086 Mastigamoeba balamuthi 108607 Evosea other_Eukaryota 106 1.4e-18   NTclustered gi|463171|gb|L23799.1|PMHRRSS 108607 g6975 i0 80.69 0.687203791469194 145 20 66 7 72 211 1193 1052 Phreatamoeba balamuthi ribosomal RNA small subunit gene blastn 145 106 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Mastigamoebidae Mastigamoeba Mastigamoeba balamuthi
2685242 2685242 PRJEB73599_P_NODE_2823_length_433_cov_3.841584_g2544_i0 PRJEB73599 2823 433 3.841584 16.63405872 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 492 2.0799999999999995e-134   NTclustered gi|511487963|gb|JX898537.1| 1260765 g2544 i0 87.471 37.7528868360277 431 48 99 6 1 428 66 493 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 16347 492 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
2685282 2685282 PRJEB73599_P_NODE_823_length_834_cov_31.795031_g407_i1 PRJEB73599 823 834 31.795031 265.17055854 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 1083 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g407 i1 99.662 126.717026378897 592 2 71 0 243 834 1206 1797 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 105682 1083 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
2685285 2685285 PRJEB73599_P_NODE_843_length_822_cov_2.448928_g682_i0 PRJEB73599 843 822 2.448928 20.13018816 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 309 2.959999999999999e-101   NR KAH3743152.1 1580589 g682 i0 55.6 2.0036496350365 275 109 98.9 6 813 1 7 272 KAH3743152.1 beta-1,3-glucan-binding protein [Pelomyxa schiedti] diamond 1647 309 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
5237772 5237772 PRJEB73599_P_NODE_9225_length_167_cov_1.702899_g8938_i0 PRJEB73599 9225 167 1.702899 2.84384133 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 211 2.18e-50   NTclustered gi|909719645|gb|KT185625.1| 5778 g8938 i0 91.083 0.940119760479042 157 12 94 2 1 157 472 626 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 157 211 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
6513262 6513262 PRJEB73599_P_NODE_3466_length_381_cov_28.218750_g3180_i0 PRJEB73599 3466 381 28.21875 107.5134375 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 671 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g3180 i0 98.425 35.7296587926509 381 6 100 0 1 381 6720 7100 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 13613 671 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
7787558 7787558 PRJEB73599_P_NODE_5947_length_253_cov_2.535714_g5660_i0 PRJEB73599 5947 253 2.535714 6.41535642 Vannella septentrionalis 197531 Discosea other_Eukaryota 250 7.58e-62   NTclustered gi|300078499|gb|GU001161.1| 197531 g5660 i0 84.674 48.1067193675889 261 28 100 11 1 253 915 1171 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 12171 250 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
9062438 9062438 PRJEB73599_P_NODE_2968_length_421_cov_3.145408_g2686_i0 PRJEB73599 2968 421 3.145408 13.24216768 Amoebozoa sp. SZA19 1089205 Root_unresolved Root_unresolved 691 0   NTclustered gi|441475832|emb|FN562422.4| 1089205 g2686 i0 96.209 15.4513064133017 422 12 100 4 1 421 439 21 Amoebozoa sp. SZA19 18S rRNA gene, isolate SZA19 blastn 6505 691 1 Eukaryota Amoebozoa             Amoebozoa sp. SZA19
11613714 11613714 PRJEB73599_P_NODE_8050_length_191_cov_1.641975_g7763_i0 PRJEB73599 8050 191 1.641975 3.13617225 Mastigamoeba balamuthi 108607 Evosea other_Eukaryota 80.5 7.54e-11   NTclustered gi|19911165|dbj|AB066365.1| 108607 g7763 i0 86.667 0.392670157068063 75 7 39 2 111 185 72 1 Mastigamoeba balamuthi gene for LSU rRNA, partial sequence, clone:MbR3 blastn 75 80.5 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Mastigamoebidae Mastigamoeba Mastigamoeba balamuthi
12474458 12474458 PRJEB73599_P_NODE_5690_length_262_cov_13.725322_g5403_i0 PRJEB73599 5690 262 13.725322 35.96034364 Tubulinea 555369 Tubulinea other_Eukaryota 484 1.99e-132   NTclustered gi|421976371|gb|JQ519505.1| 5778 g5403 i0 100 99.9923664122137 262 0 100 0 1 262 126 387 Vermamoeba vermiformis clone JG10.99 18S ribosomal RNA gene, partial sequence blastn 26198 484 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
12888768 12888768 PRJEB73599_P_NODE_8411_length_182_cov_9.496732_g8124_i0 PRJEB73599 8411 182 9.496732 17.28405224 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 296 6.48e-76   NTclustered gi|46393848|gb|AY502960.1| 5778 g8124 i0 100 87.8791208791209 160 0 88 0 1 160 1819 1660 Hartmannella vermiformis isolate KWR-2 18S ribosomal RNA gene, partial sequence blastn 15994 296 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
17573426 17573426 PRJEB73599_P_NODE_5914_length_254_cov_3.355556_g5627_i0 PRJEB73599 5914 254 3.355556 8.52311224 Cochliopodium 313557 Discosea other_Eukaryota 431 2.539999999999999e-116   NTclustered gi|399764162|gb|JQ271673.1| 313997 g5627 i0 96.923 42.503937007874 260 2 100 4 1 254 727 986 Cochliopodium minus strain UKNCC:CCAP1537/1 18S ribosomal RNA gene, partial sequence blastn 10796 431 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
17573438 17573438 PRJEB73599_P_NODE_9114_length_169_cov_2.114286_g8827_i0 PRJEB73599 9114 169 2.114286 3.57314334 Hartmannellidae 5776 Tubulinea other_Eukaryota 302 1.27e-77   NTclustered gi|24527245|gb|AY145442.1| 211864 g8827 i0 98.817 17.4319526627219 169 2 100 0 1 169 248 416 Hartmannellidae sp. LOS7N/I small subunit ribosomal RNA gene, complete sequence blastn 2946 302 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae   Hartmannellidae sp. LOS7N/I
20122017 20122017 PRJEB73599_P_NODE_3716_length_363_cov_28.356287_g3430_i0 PRJEB73599 3716 363 28.356287 102.93332181 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 671 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g3430 i0 100 54.5619834710744 363 0 100 0 1 363 872 1234 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 19806 671 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20536075 20536075 PRJEB73599_P_NODE_3177_length_403_cov_8.029412_g2891_i0 PRJEB73599 3177 403 8.029412 32.35853036 Cochliopodium sp. JvW-2015 1678068 Discosea other_Eukaryota 580 3.9899999999999985e-161   NTclustered gi|861554067|gb|KP719191.1| 1678068 g2891 i0 93.798 58.3349875930521 387 23 96 1 18 403 418 32 Cochliopodium sp. JvW-2015 strain A1HEB clone 1 small subunit ribosomal RNA gene, partial sequence blastn 23509 580 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium sp. JvW-2015
20536115 20536115 PRJEB73599_P_NODE_9177_length_168_cov_1.899281_g8890_i0 PRJEB73599 9177 168 1.899281 3.19079208 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 311 2.11e-80   NTclustered gi|292559443|ref|NC_013986.1| 5778 g8890 i0 100 41.3035714285714 168 0 100 0 1 168 19372 19205 Hartmannella vermiformis mitochondrion, complete genome blastn 6939 311 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21397649 21397649 PRJEB73599_P_NODE_4037_length_343_cov_2.429936_g3750_i0 PRJEB73599 4037 343 2.429936 8.33468048 Cochliopodium 313557 Discosea other_Eukaryota 359 1.7099999999999998e-94   NTclustered gi|399764162|gb|JQ271673.1| 313997 g3750 i0 92.4 33.064139941691 250 12 96 3 2 250 12 255 Cochliopodium minus strain UKNCC:CCAP1537/1 18S ribosomal RNA gene, partial sequence blastn 11341 359 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
23086998 23086998 PRJEB73599_P_NODE_7079_length_216_cov_4.770053_g6792_i0 PRJEB73599 7079 216 4.770053 10.30331448 Vannella septentrionalis 197531 Discosea other_Eukaryota 220 4.94e-53   NTclustered gi|300078499|gb|GU001161.1| 197531 g6792 i0 85.238 0.972222222222222 210 27 97 4 8 216 4355 4149 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 210 220 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
25221636 25221636 PRJEB73599_P_NODE_1540_length_598_cov_36.117750_g1322_i0 PRJEB73599 1540 598 36.11775 215.984145 Vermamoeba 1260114 Tubulinea other_Eukaryota 1048 0   NTclustered gi|2777861736|gb|PQ072230.1| 5778 g1322 i0 97.826 83.061872909699 598 12 100 1 1 598 902 306 Vermamoeba vermiformis strain CCAP_1534_12_consensus_sequence small subunit ribosomal RNA gene, partial sequence blastn 49671 1048 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
25221647 25221647 PRJEB73599_P_NODE_4280_length_329_cov_3.643333_g3993_i0 PRJEB73599 4280 329 3.643333 11.98656557 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 505 1.9799999999999995e-138   NTclustered gi|441475832|emb|FN562422.4| 1089205 g3993 i0 95.541 42.9696048632219 314 13 95 1 1 314 953 641 Amoebozoa sp. SZA19 18S rRNA gene, isolate SZA19 blastn 14137 510 0.990196078431373 Eukaryota Amoebozoa             Amoebozoa sp. SZA19
27413633 27413633 PRJEB73599_P_NODE_2863_length_430_cov_2.301746_g2584_i0 PRJEB73599 2863 430 2.301746 9.8975078 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 50.8 3.88e-4   NR XP_638796.1 352472 g2584 i0 43.1 0.453488372093023 65 31 45.3 2 212 18 219 277 XP_638796.1 heat shock protein Hsp20 domain-containing protein [Dictyostelium discoideum AX4] diamond 195 50.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
28960794 28960794 PRJEB73599_P_NODE_5648_length_264_cov_2.268085_g5361_i0 PRJEB73599 5648 264 2.268085 5.9877444 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 103 5.09e-24   NR KAH3743152.1 1580589 g5361 i0 69 0.659090909090909 58 18 65.9 0 6 179 271 328 KAH3743152.1 beta-1,3-glucan-binding protein [Pelomyxa schiedti] diamond 174 103 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
29497255 29497255 PRJEB73599_P_NODE_4370_length_325_cov_2.388514_g4083_i0 PRJEB73599 4370 325 2.388514 7.7626705 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 180 7.04e-53   NR XP_004336605.1 1257118 g4083 i0 80.2 7.84615384615385 106 21 97.8 0 320 3 176 281 XP_004336605.1 atpdependent rna helicase ddx6, putative [Acanthamoeba castellanii str. Neff] diamond 2550 180 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29970945 29970945 PRJEB73599_P_NODE_1011_length_749_cov_2.962500_g834_i0 PRJEB73599 1011 749 2.9625 22.189125 Polysphondylium violaceum 133409 Evosea other_Eukaryota 219 5.51e-66   NR KAF2071097.1 133409 g834 i0 52 0.901201602136182 225 98 88.1 4 749 90 117 336 KAF2071097.1 hypothetical protein CYY_007583 [Polysphondylium violaceum] diamond 675 219 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
31393100 31393100 PRJEB73599_P_NODE_2796_length_436_cov_2.051597_g2517_i0 PRJEB73599 2796 436 2.051597 8.94496292 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 50.8 4.1e-4   NR XP_638796.1 352472 g2517 i0 43.1 0.447247706422018 65 31 44.7 2 212 18 219 277 XP_638796.1 heat shock protein Hsp20 domain-containing protein [Dictyostelium discoideum AX4] diamond 195 50.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
32183877 32183877 PRJEB73599_P_NODE_938_length_776_cov_2.492637_g682_i1 PRJEB73599 938 776 2.492637 19.34286312 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 259 5.319999999999998e-82   NR KAH3743152.1 1580589 g682 i1 58.5 2.40850515463918 207 81 80 3 5 625 127 328 KAH3743152.1 beta-1,3-glucan-binding protein [Pelomyxa schiedti] diamond 1869 259 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;