RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB673" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJEB673 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3960986 3960986 PRJEB673_P_NODE_10724_length_169_cov_2.574627_g10375_i0 PRJEB673 10724 169 2.574627 4.35111963 Deinococcus actinosclerus 1768108 Bacteria Bacteria 313 5.859999999999999e-81   NTclustered gi|972944657|gb|CP013910.1| 1768108 g10375 i0 100 194.763313609467 169 0 100 0 1 169 74087 73919 Deinococcus actinosclerus strain BM2 chromosome, complete genome blastn 32915 313 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus actinosclerus
20121782 20121782 PRJEB673_P_NODE_10916_length_167_cov_1.507576_g10567_i0 PRJEB673 10916 167 1.507576 2.51765192 Deinococcus 1298 Bacteria Bacteria 281 1.64e-71   NTclustered gi|1751871007|dbj|AP021849.1| 57498 g10567 i0 97.006 194.916167664671 167 5 100 0 1 167 72883 72717 Deinococcus grandis ATCC 43672 DNA, complete genome blastn 32551 281 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis
23947811 23947811 PRJEB673_P_NODE_10519_length_172_cov_1.941606_g10170_i0 PRJEB673 10519 172 1.941606 3.33956232 Deinococcus 1298 Bacteria Bacteria 285 1.31e-72   NTclustered gi|1751871007|dbj|AP021849.1| 57498 g10170 i0 96.512 200.046511627907 172 6 100 0 1 172 72727 72556 Deinococcus grandis ATCC 43672 DNA, complete genome blastn 34408 285 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;