RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB673", tax_clade = "Sar" and tax_phylum = "Perkinsozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB673 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9062143 9062143 PRJEB673_P_NODE_1168_length_871_cov_2.674641_g962_i0 PRJEB673 1168 871 2.674641 23.29612311 Perkinsus sp. BL_2 28001 SAR_Eukaryotes SAR_Eukaryotes 129 5.209999999999999e-32   NR TEB19254.1 2494336 g962 i0 33.7 0.91963260619977 267 155 85.8 8 46 792 1 263 TEB19254.1 hypothetical protein C9890_0250 [Perkinsus sp. BL_2016] diamond 801 129 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus sp. BL_2016
17986536 17986536 PRJEB673_P_NODE_7635_length_311_cov_1.554348_g7286_i0 PRJEB673 7635 311 1.554348 4.83402228 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 139 2.17e-28   NTclustered gi|294882564|ref|XM_002769695.1| 423536 g7286 i0 91.176 13.5980707395498 102 9 33 0 192 293 193 294 Perkinsus marinus ATCC 50983 60S ribosomal subunit protein L4, putative, mRNA blastn 4229 139 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
31329620 31329620 PRJEB673_P_NODE_5556_length_376_cov_2.803519_g5207_i0 PRJEB673 5556 376 2.803519 10.54123144 Perkinsus sp. BL_2 28001 SAR_Eukaryotes SAR_Eukaryotes 58.2 4.26e-7   NR TEB19254.1 2494336 g5207 i0 57.4 0.375 47 20 37.5 0 319 179 211 257 TEB19254.1 hypothetical protein C9890_0250 [Perkinsus sp. BL_2016] diamond 141 58.2 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus sp. BL_2016

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;