RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJEB673", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 6 ✖

bioproject 1

  • PRJEB673 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9062147 9062147 PRJEB673_P_NODE_1228_length_850_cov_8.323926_g1019_i0 PRJEB673 1228 850 8.323926 70.753371 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 1352 0   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g1019 i0 96.569 279.321176470588 816 28 96 0 1 816 4717234 4716419 Luteolibacter sp. SL250 chromosome blastn 237423 1352 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
10337986 10337986 PRJEB673_P_NODE_6589_length_338_cov_2.917492_g6240_i0 PRJEB673 6589 338 2.917492 9.86112296 Luteolibacter sp. Populi 3230487 Bacteria Bacteria 508 1.58e-139   NTclustered gi|2774618348|gb|CP161812.1| 3230487 g6240 i0 93.787 102.062130177515 338 21 100 0 1 338 3261715 3261378 Luteolibacter sp. Populi chromosome, complete genome blastn 34497 508 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. Populi
18846973 18846973 PRJEB673_P_NODE_5835_length_364_cov_5.939210_g5486_i0 PRJEB673 5835 364 5.93921 21.6187244 Verrucomicrobiales 48461 Bacteria Bacteria 468 2.89e-127   NTclustered gi|2647781590|dbj|AP024702.1| 490095 g5486 i0 91.74 392.796703296703 339 24 93 4 1 337 775555 775891 Haloferula helveola CN-1 DNA, complete genome blastn 142978 470 0.995744680851064 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Haloferula Haloferula helveola
27571201 27571201 PRJEB673_P_NODE_12104_length_156_cov_1.322314_g11755_i0 PRJEB673 12104 156 1.322314 2.06280984 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 60.5 6.49e-9   NR MDH4372957.1 2026799 g11755 i0 54.9 0.980769230769231 51 23 98.1 0 156 4 552 602 MDH4372957.1 glycosyltransferase [Verrucomicrobiota bacterium] diamond 153 60.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31962250 31962250 PRJEB673_P_NODE_12418_length_154_cov_1.008403_g12069_i0 PRJEB673 12418 154 1.008403 1.55294062 Prosthecobacter sp. 1965333 Bacteria Bacteria 79 1.22e-15   NR WP_322282923.1 1965333 g12069 i0 75.5 5.68831168831169 49 12 95.5 0 3 149 265 313 WP_322282923.1 alkene reductase [Prosthecobacter sp.] diamond 876 79 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
32057191 32057191 PRJEB673_P_NODE_3698_length_518_cov_1.418219_g3371_i0 PRJEB673 3698 518 1.418219 7.34637442 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 131 3.0999999999999996e-32   NR MBL9134577.1 2026801 g3371 i0 76.5 4.22200772200772 81 19 46.9 0 274 516 363 443 MBL9134577.1 phosphoenolpyruvate carboxykinase (ATP) [Verrucomicrobiales bacterium] diamond 2187 131 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;