RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB673", tax_clade = "PVC group" and tax_phylum = "Planctomycetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJEB673 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2684951 2684951 PRJEB673_P_NODE_10863_length_168_cov_1.203008_g10514_i0 PRJEB673 10863 168 1.203008 2.02105344 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 255 1e-63   NTclustered gi|2874253853|emb|OY969909.1| 1914239 g10514 i0 94.083 158.380952380952 169 9 100 1 1 168 2003386 2003218 MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 blastn 26608 255 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
5237506 5237506 PRJEB673_P_NODE_9425_length_197_cov_1.716049_g9076_i0 PRJEB673 9425 197 1.716049 3.38061653 Gemmata massiliana 1210884 Bacteria Bacteria 303 4.27e-78   NTclustered gi|1804905141|emb|LR593886.1| 1210884 g9076 i0 94.416 34.1269035532995 197 11 100 0 1 197 3634990 3634794 Gemmata massiliana isolate Soil9 genome assembly, chromosome: 1 blastn 6723 303 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata massiliana
31417369 31417369 PRJEB673_P_NODE_9216_length_206_cov_1.391813_g8867_i0 PRJEB673 9216 206 1.391813 2.86713478 Bacteria 2 Bacteria Bacteria 55.5 7.25e-7   NR HVS10494.1 2026780 g8867 i0 51 2.05339805825243 49 24 71.4 0 4 150 91 139 HVS10494.1 FKBP-type peptidyl-prolyl cis-trans isomerase [Planctomycetota bacterium] diamond 423 55.8 0.99462365591397806 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
31796733 31796733 PRJEB673_P_NODE_11317_length_162_cov_1.574803_g10968_i0 PRJEB673 11317 162 1.574803 2.55118086 Pseudomonadati 3379134 Bacteria Bacteria 80.1 7.81e-16   NR WP_146661715.1 1936003 g10968 i0 69.6 17.2037037037037 46 14 85.2 0 21 158 109 154 WP_146661715.1 adenosylhomocysteinase [Anaerohalosphaera lusitana] diamond 2787 80.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Sedimentisphaerales Anaerohalosphaeraceae Anaerohalosphaera Anaerohalosphaera lusitana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;