RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJEB673", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJEB673 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27160256 27160256 PRJEB673_P_NODE_4862_length_415_cov_2.021053_g4514_i0 PRJEB673 4862 415 2.021053 8.38736995 Chlamydiales bacterium 2047757 Bacteria Bacteria 231 1.23e-75   NR MCP5470421.1 2047757 g4514 i0 81.5 0.975903614457831 135 25 97.6 0 413 9 24 158 MCP5470421.1 hypothetical protein [Chlamydiales bacterium] diamond 405 231 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
30255612 30255612 PRJEB673_P_NODE_4912_length_412_cov_1.920424_g4564_i0 PRJEB673 4912 412 1.920424 7.91214688 Simkania sp. 34094 Bacteria Bacteria 74.3 5.37e-13   NR MCB1084310.1 34094 g4564 i0 57.9 0.41504854368932 57 24 41.5 0 410 240 114 170 MCB1084310.1 hypothetical protein [Simkania sp.] diamond 171 74.3 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
30539614 30539614 PRJEB673_P_NODE_4733_length_425_cov_2.184615_g4385_i0 PRJEB673 4733 425 2.184615 9.28461375 Chlamydiales bacterium 2047757 Bacteria Bacteria 159 8.089999999999999e-47   NR MCP5470420.1 2047757 g4385 i0 75.2 0.910588235294118 129 30 91.1 1 423 37 29 155 MCP5470420.1 ribosomal protein L24e family protein [Chlamydiales bacterium] diamond 387 159 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;