RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB673", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 2 ✖

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJEB673 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19260530 19260530 PRJEB673_P_NODE_5676_length_372_cov_1.287834_g5327_i0 PRJEB673 5676 372 1.287834 4.79074248 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 102 3.46e-17   NTclustered gi|2319628303|ref|XM_001315735.2| 412133 g5327 i0 84.259 0.567204301075269 108 14 28 3 264 368 615 722 Trichomonas vaginalis G3 endoplasmic reticulum-plasma membrane tethering (TVAGG3_0192090), partial mRNA blastn 211 102 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28044806 28044806 PRJEB673_P_NODE_10925_length_167_cov_1.257576_g10576_i0 PRJEB673 10925 167 1.257576 2.10015192 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 52.8 2.18e-6   NR XP_068367506.1 1144522 g10576 i0 50.9 1.97604790419162 55 25 97 2 165 4 102 155 XP_068367506.1 Ras-related protein Rab-14 [Tritrichomonas foetus] diamond 330 52.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;