RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB673" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJEB673 · 4 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9062163 9062163 PRJEB673_P_NODE_1848_length_711_cov_1.948225_g1597_i0 PRJEB673 1848 711 1.948225 13.85187975 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 225 6.859999999999998e-69   NR XP_013760592.1 461836 g1597 i0 66.9 0.70042194092827 166 53 70 1 710 213 141 304 XP_013760592.1 adenine nucleotide translocator [Thecamonas trahens ATCC 50062] diamond 498 225 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
26653973 26653973 PRJEB673_P_NODE_11101_length_165_cov_1.223077_g10752_i0 PRJEB673 11101 165 1.223077 2.01807705 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 81.6 2.33e-16   NR XP_013762847.1 461836 g10752 i0 64.2 3.85454545454545 53 19 96.4 0 3 161 309 361 XP_013762847.1 uncharacterized protein AMSG_00576 [Thecamonas trahens ATCC 50062] diamond 636 81.6 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
30350601 30350601 PRJEB673_P_NODE_912_length_975_cov_1.790426_g730_i0 PRJEB673 912 975 1.790426 17.4566535 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 52 5.57e-4   NR XP_013760584.1 461836 g730 i0 38.3 0.289230769230769 94 47 28.9 3 617 336 95 177 XP_013760584.1 phosphate transporter [Thecamonas trahens ATCC 50062] diamond 282 52 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
31266442 31266442 PRJEB673_P_NODE_5135_length_397_cov_3.118785_g4786_i0 PRJEB673 5135 397 3.118785 12.38157645 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 202 1.38e-61   NR XP_013760592.1 461836 g4786 i0 69.9 1.15617128463476 153 24 99 2 395 3 66 218 XP_013760592.1 adenine nucleotide translocator [Thecamonas trahens ATCC 50062] diamond 459 202 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;