RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJEB673", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJEB673 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2685017 2685017 PRJEB673_P_NODE_5863_length_363_cov_11.865854_g5514_i0 PRJEB673 5863 363 11.865854 43.07305002 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 204 8.98e-48   NTclustered gi|470521486|ref|XM_004353672.1| 1257118 g5514 i0 82.479 64.8732782369146 234 39 64 2 92 324 99 331 Acanthamoeba castellanii str. Neff Histone H4, putative (ACA1_376700), partial mRNA blastn 23549 204 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
17986513 17986513 PRJEB673_P_NODE_5675_length_372_cov_1.379822_g5326_i0 PRJEB673 5675 372 1.379822 5.13293784 Ripella decalvata 2047822 Discosea other_Eukaryota 593 4.689999999999999e-165   NTclustered gi|1269228392|gb|MF683517.1| 2047822 g5326 i0 95.479 93.0940860215054 376 10 100 7 1 372 1577 1205 Ripella decalvata clone 23.3.1 18S ribosomal RNA gene, partial sequence blastn 34631 593 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata
20121793 20121793 PRJEB673_P_NODE_8936_length_223_cov_1.377660_g8587_i0 PRJEB673 8936 223 1.37766 3.0721818 Vannella 95228 Discosea other_Eukaryota 385 1.72e-102   NTclustered gi|399764213|gb|JQ271724.1| 1215628 g8587 i0 97.758 87 223 5 100 0 1 223 362 140 Vannella sp. ACN1 18S ribosomal RNA gene, partial sequence blastn 19401 385 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. ACN1
26590619 26590619 PRJEB673_P_NODE_6501_length_341_cov_1.751634_g6152_i0 PRJEB673 6501 341 1.751634 5.97307194 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 73.2 6.73e-14   NR 1F2K_A 5755 g6152 i0 75.6 0.395894428152493 45 11 39.6 0 205 339 62 106 1F2K_A Chain A, PROFILIN II [Acanthamoeba castellanii] diamond 135 73.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27286962 27286962 PRJEB673_P_NODE_2563_length_615_cov_4.634483_g2269_i0 PRJEB673 2563 615 4.634483 28.50207045 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 45.4 0.0114   NR XP_004351526.1 1257118 g2269 i0 44.9 0.239024390243902 49 27 23.9 0 560 414 26 74 XP_004351526.1 selT/selW/selH selenoprotein domain containing protein [Acanthamoeba castellanii str. Neff] diamond 147 45.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29497244 29497244 PRJEB673_P_NODE_10070_length_181_cov_1.643836_g9721_i0 PRJEB673 10070 181 1.643836 2.97534316 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 76.3 1.41e-14   NR XP_004356622.1 1257118 g9721 i0 59.3 0.977900552486188 59 24 97.8 0 179 3 69 127 XP_004356622.1 mitochondrial phosphate transporter, putative [Acanthamoeba castellanii str. Neff] diamond 177 76.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30382092 30382092 PRJEB673_P_NODE_4073_length_485_cov_2.051111_g3739_i0 PRJEB673 4073 485 2.051111 9.94788835 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47.8 8.41e-4   NR XP_004351526.1 1257118 g3739 i0 46.9 0.303092783505155 49 26 30.3 0 458 312 26 74 XP_004351526.1 selT/selW/selH selenoprotein domain containing protein [Acanthamoeba castellanii str. Neff] diamond 147 47.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;