RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJEB66218" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 6 ✖

tax_clade 1

bioproject 1

  • PRJEB66218 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17986023 17986023 PRJEB66218_P_NODE_82475_length_346_cov_5.070175_g80048_i0 PRJEB66218 82475 346 5.070175 17.5428055 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 65.8 4.21e-6   NTclustered gi|2319615616|ref|XR_007835995.1| 412133 g80048 i0 90.385 0.673410404624277 52 2 15 3 204 254 2610 2561 Trichomonas vaginalis G3 23S ribosomal RNA (TVAGG3_0034210), rRNA blastn 233 65.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
23085312 23085312 PRJEB66218_P_NODE_42479_length_532_cov_3.569002_g40072_i0 PRJEB66218 42479 532 3.569002 18.98709064 Tritrichomonas musculus 1915356 Parabasalia other_Eukaryota 129 1.83e-31   NR KAK8834328.1 1915356 g40072 i0 50.3 0.828947368421053 147 72 82.9 1 91 531 11 156 KAK8834328.1 phosphopyruvate hydratase [Tritrichomonas musculus] diamond 441 129 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas musculus
29118541 29118541 PRJEB66218_P_NODE_237349_length_203_cov_0.880282_g234918_i0 PRJEB66218 237349 203 0.880282 1.78697246 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 87 5.45e-18   NR XP_001319907.1 412133 g234918 i0 65.6 10.8029556650246 61 21 90.1 0 199 17 286 346 XP_001319907.1 kinesin-related family [Trichomonas vaginalis G3] diamond 2193 87 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
29686255 29686255 PRJEB66218_P_NODE_173010_length_225_cov_1.981707_g170580_i0 PRJEB66218 173010 225 1.981707 4.45884075 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 59.3 4.1e-8   NR KAH0786112.1 135588 g170580 i0 42.9 2.98666666666667 77 36 94.7 3 12 224 154 228 KAH0786112.1 radial spoke head protein 4 A [Histomonas meleagridis] diamond 672 59.3 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
29844462 29844462 PRJEB66218_P_NODE_217191_length_207_cov_0.890411_g214761_i0 PRJEB66218 217191 207 0.890411 1.84315077 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 64.3 5.43e-10   NR XP_068361265.1 1144522 g214761 i0 51.7 1.68115942028985 58 28 84.1 0 205 32 222 279 XP_068361265.1 Myb-like DNA-binding domain containing protein [Tritrichomonas foetus] diamond 348 64.3 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
32088746 32088746 PRJEB66218_P_NODE_202458_length_210_cov_0.872483_g200028_i0 PRJEB66218 202458 210 0.872483 1.8322143 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 80.9 7.23e-17   NR XP_001317232.1 412133 g200028 i0 49.3 4.92857142857143 69 35 98.6 0 210 4 59 127 XP_001317232.1 GTPase, Ras family, Rab subfamily [Trichomonas vaginalis G3] diamond 1035 80.9 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;