RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where bioproject = "PRJEB66218", tax_phylum = "Nitrososphaerota" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Archaea · 10 ✖

tax_phylum 1

  • Nitrososphaerota · 10 ✖

tax_kingdom 1

bioproject 1

  • PRJEB66218 · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2681696 2681696 PRJEB66218_P_NODE_158463_length_235_cov_1.804598_g156033_i0 PRJEB66218 158463 235 1.804598 4.2408053 Candidatus Nitrosocosmicus hydrocola 1826872 Archaea Archaea 418 1.8e-112   NTclustered gi|1100598057|gb|CP017922.1| 1826872 g156033 i0 98.723 23.2170212765957 235 3 100 0 1 235 1790066 1790300 Candidatus Nitrosocosmicus hydrocola strain G61, complete genome blastn 5456 418 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus hydrocola
3957291 3957291 PRJEB66218_P_NODE_139424_length_251_cov_2.736842_g136995_i0 PRJEB66218 139424 251 2.736842 6.86947342 Candidatus Nitrosotenuis cloacae 1603555 Archaea Archaea 464 2.47e-126   NTclustered gi|808354332|gb|CP011097.2| 1603555 g136995 i0 100 22.3745019920319 251 0 100 0 1 251 739563 739313 Candidatus Nitrosotenuis cloacae strain SAT1, complete genome blastn 5616 464 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis cloacae
3957547 3957547 PRJEB66218_P_NODE_153064_length_239_cov_1.646067_g150635_i0 PRJEB66218 153064 239 1.646067 3.93410013 Candidatus Nitrosocosmicus oleophilus 1353260 Archaea Archaea 436 5.0799999999999985e-118   NTclustered gi|937513727|gb|CP012850.1| 1353260 g150635 i0 99.582 56.6401673640167 239 1 100 0 1 239 848179 848417 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 13537 436 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
3957659 3957659 PRJEB66218_P_NODE_159684_length_234_cov_2.127168_g157254_i0 PRJEB66218 159684 234 2.127168 4.97757312 Candidatus Nitrosotenuis cloacae 1603555 Archaea Archaea 368 1.8299999999999999e-97   NTclustered gi|808354332|gb|CP011097.2| 1603555 g157254 i0 100 58.3632478632479 199 0 100 0 36 234 741640 741442 Candidatus Nitrosotenuis cloacae strain SAT1, complete genome blastn 13657 368 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis cloacae
12886440 12886440 PRJEB66218_P_NODE_239271_length_202_cov_0.921986_g236840_i0 PRJEB66218 239271 202 0.921986 1.86241172 Nitrosarchaeum sp. AC2 2259673 Archaea Archaea 219 1.6399999999999997e-52   NTclustered gi|1869229208|gb|CP030847.1| 2259673 g236840 i0 86.432 0.985148514851485 199 27 99 0 1 199 197654 197852 Nitrosarchaeum sp. AC2 chromosome, complete genome blastn 199 219 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosarchaeum Nitrosarchaeum sp. AC2
20531643 20531643 PRJEB66218_P_NODE_118357_length_277_cov_1.523148_g115928_i0 PRJEB66218 118357 277 1.523148 4.21911996 Candidatus Nitrosocosmicus hydrocola 1826872 Archaea Archaea 512 9.73e-141   NTclustered gi|1100598057|gb|CP017922.1| 1826872 g115928 i0 100 22.6281588447653 277 0 100 0 1 277 1792017 1792293 Candidatus Nitrosocosmicus hydrocola strain G61, complete genome blastn 6268 512 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus hydrocola
23082603 23082603 PRJEB66218_P_NODE_115219_length_281_cov_3.113636_g112790_i0 PRJEB66218 115219 281 3.113636 8.74931716 Candidatus Nitrosocosmicus franklandianus 1798806 Archaea Archaea 503 5.95e-138   NTclustered gi|1599533355|emb|LR216287.1| 1798806 g112790 i0 98.932 18.779359430605 281 3 100 0 1 281 1407 1127 Candidatus Nitrosocosmicus franklandus isolate NFRAN1 genome assembly, chromosome: NFRAN blastn 5277 503 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus franklandianus
23083907 23083907 PRJEB66218_P_NODE_185339_length_218_cov_1.025478_g182909_i0 PRJEB66218 185339 218 1.025478 2.23554204 Candidatus Nitrosocosmicus hydrocola 1826872 Archaea Archaea 398 2.1499999999999996e-106   NTclustered gi|1100598057|gb|CP017922.1| 1826872 g182909 i0 99.541 28.1605504587156 218 1 100 0 1 218 1790463 1790246 Candidatus Nitrosocosmicus hydrocola strain G61, complete genome blastn 6139 398 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus hydrocola
28518463 28518463 PRJEB66218_P_NODE_179167_length_221_cov_2.168750_g176737_i0 PRJEB66218 179167 221 2.16875 4.7929375 Nitrososphaerales archaeon 2268197 Archaea Archaea 75.1 1.12e-13   NR HXW36580.1 2268197 g176737 i0 58.3 2.33484162895928 60 25 81.4 0 203 24 422 481 HXW36580.1 aconitase family protein [Nitrososphaerales archaeon] diamond 516 75.1 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales     Nitrososphaerales archaeon
31488051 31488051 PRJEB66218_P_NODE_97336_length_312_cov_0.936255_g94908_i0 PRJEB66218 97336 312 0.936255 2.9211156 Nitrososphaerota archaeon 2026795 Archaea Archaea 53.1 1.77e-5   NR MDE1812249.1 2026795 g94908 i0 32.7 1.90384615384615 98 62 90.4 1 22 303 193 290 MDE1812249.1 radical SAM protein [Nitrososphaerota archaeon] diamond 594 53.1 1 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;