RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

13 rows where bioproject = "PRJEB66218" and tax_phylum = "Cryptomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cryptomycota · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB66218 · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2680622 2680622 PRJEB66218_P_NODE_106763_length_294_cov_4.381974_g104334_i0 PRJEB66218 106763 294 4.381974 12.88300356 Cryptomycota sp. 2012228 Fungi Fungi 228 4.219999999999999e-55   NTclustered gi|2468790980|gb|OQ702912.1| 2012228 g104334 i0 83.2 47.5170068027211 250 41 85 1 45 294 3811 4059 Cryptomycota sp. isolate PSC211 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 13970 228 1 Eukaryota Opisthokonta Fungi Cryptomycota         Cryptomycota sp.
3957363 3957363 PRJEB66218_P_NODE_142664_length_248_cov_1.759358_g140235_i0 PRJEB66218 142664 248 1.759358 4.36320784 Rozella sp. 1932610 Fungi Fungi 104 6.11e-18   NTclustered gi|2468791023|gb|OQ702923.1| 1932610 g140235 i0 92 40.3870967741936 75 4 30 2 145 218 4117 4044 Rozella sp. isolate PSC249 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 10016 104 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella sp.
10337556 10337556 PRJEB66218_P_NODE_85889_length_337_cov_2.688406_g83462_i0 PRJEB66218 85889 337 2.688406 9.05992822 Eukaryota 2759 Fungi Fungi 176 1.7799999999999998e-54   NR EPZ30830.1 988480 g83462 i0 81.1 8.59940652818991 106 20 94.4 0 337 20 28 133 EPZ30830.1 Histone H2A [Rozella allomycis CSF55] diamond 2898 176 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis
11612216 11612216 PRJEB66218_P_NODE_54070_length_455_cov_1.548223_g51651_i0 PRJEB66218 54070 455 1.548223 7.04441465 Paramicrosporidium saccamoebae 1246581 Fungi Fungi 229 3.28e-74   NR PJF20044.1 1246581 g51651 i0 76.9 0.969230769230769 147 34 96.9 0 1 441 20 166 PJF20044.1 hypothetical protein PSACC_00140 [Paramicrosporidium saccamoebae] diamond 441 229 1 Eukaryota Opisthokonta Fungi Cryptomycota       Paramicrosporidium Paramicrosporidium saccamoebae
17982388 17982388 PRJEB66218_P_NODE_122355_length_271_cov_4.438095_g119926_i0 PRJEB66218 122355 271 4.438095 12.02723745 Rozella sp. JEL347 276837 Fungi Fungi 80.5 1.14e-10   NTclustered gi|82398068|gb|DQ273766.1| 276837 g119926 i0 92.727 0.328413284132841 55 4 20 0 1 55 62 8 Rozella sp. JEL347 isolate AFTOL-ID 16 28S ribosomal RNA gene, partial sequence blastn 89 80.5 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella sp. JEL347
19258116 19258116 PRJEB66218_P_NODE_22016_length_823_cov_2.581365_g19889_i0 PRJEB66218 22016 823 2.581365 21.24463395 root 1 Root_unresolved Root_unresolved 233 1.5e-69   NR RKP20138.1 988480 g19889 i0 60.2 9.91494532199271 196 76 70.7 1 583 2 15 210 RKP20138.1 pyruvate kinase [Rozella allomycis CSF55] diamond 8160 234 0.995726495726496 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis
20533316 20533316 PRJEB66218_P_NODE_210297_length_208_cov_1.333333_g207867_i0 PRJEB66218 210297 208 1.333333 2.77333264 Paramicrosporidium saccamoebae 1246581 Fungi Fungi 135 7.729999999999998e-35   NR PJF19231.1 1246581 g207867 i0 87 0.995192307692308 69 9 99.5 0 207 1 1217 1285 PJF19231.1 Aminoacyl-tRNA synthetase, class Ia domain-containing protein [Paramicrosporidium saccamoebae] diamond 207 135 1 Eukaryota Opisthokonta Fungi Cryptomycota       Paramicrosporidium Paramicrosporidium saccamoebae
28076310 28076310 PRJEB66218_P_NODE_97745_length_311_cov_1.252000_g95317_i0 PRJEB66218 97745 311 1.252 3.89372 Rozella allomycis CSF55 988480 Fungi Fungi 74.3 5.74e-13   NR EPZ32488.1 988480 g95317 i0 63.8 0.559485530546624 58 20 55.9 1 310 137 340 396 EPZ32488.1 Cyclic nucleotide-binding domain-containing protein [Rozella allomycis CSF55] diamond 174 74.3 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis
29876110 29876110 PRJEB66218_P_NODE_128471_length_264_cov_1.113300_g126042_i0 PRJEB66218 128471 264 1.1133 2.939112 Paramicrosporidium saccamoebae 1246581 Fungi Fungi 98.2 1.5300000000000002e-21   NR PJF19231.1 1246581 g126042 i0 55.3 0.965909090909091 85 36 96.6 1 256 2 1492 1574 PJF19231.1 Aminoacyl-tRNA synthetase, class Ia domain-containing protein [Paramicrosporidium saccamoebae] diamond 255 98.2 1 Eukaryota Opisthokonta Fungi Cryptomycota       Paramicrosporidium Paramicrosporidium saccamoebae
30160232 30160232 PRJEB66218_P_NODE_63092_length_411_cov_2.862857_g60670_i0 PRJEB66218 63092 411 2.862857 11.76634227 Rozella allomycis CSF55 988480 Fungi Fungi 50.8 3.59e-4   NR EPZ35544.1 988480 g60670 i0 31.2 0.795620437956204 109 73 78.8 2 82 405 636 743 EPZ35544.1 Lipoxygenase, LH2 domain-containing protein [Rozella allomycis CSF55] diamond 327 50.8 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis
30413426 30413426 PRJEB66218_P_NODE_136133_length_255_cov_1.340206_g133704_i0 PRJEB66218 136133 255 1.340206 3.4175253 Rozella allomycis CSF55 988480 Fungi Fungi 45.1 0.00675   NR EPZ35357.1 988480 g133704 i0 39.2 0.870588235294118 74 41 82.4 1 1 210 524 597 EPZ35357.1 78 kDa glucose-regulated-like protein [Rozella allomycis CSF55] diamond 222 45.1 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis
30974901 30974901 PRJEB66218_P_NODE_207734_length_209_cov_0.878378_g205304_i0 PRJEB66218 207734 209 0.878378 1.83581002 Fungi 4751 Fungi Fungi 107 4.05e-25   NR PJF19119.1 1246581 g205304 i0 78.1 8.51196172248804 64 14 91.9 0 194 3 22 85 PJF19119.1 4-hydroxyphenylpyruvate dioxygenase [Paramicrosporidium saccamoebae] diamond 1779 107 1 Eukaryota Opisthokonta Fungi Cryptomycota       Paramicrosporidium Paramicrosporidium saccamoebae
32720806 32720806 PRJEB66218_P_NODE_11920_length_1241_cov_3.336441_g10333_i0 PRJEB66218 11920 1241 3.336441 41.40523281 Paramicrosporidium saccamoebae 1246581 Fungi Fungi 284 1.95e-90   NR PJF16902.1 1246581 g10333 i0 64 9.99838839645447 236 82 56.8 3 1079 375 24 257 PJF16902.1 hypothetical protein PSACC_03283 [Paramicrosporidium saccamoebae] diamond 12408 284 1 Eukaryota Opisthokonta Fungi Cryptomycota       Paramicrosporidium Paramicrosporidium saccamoebae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;