RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB66218" and tax_clade = "SAR202 cluster"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • SAR202 cluster · 3 ✖

bioproject 1

  • PRJEB66218 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15435348 15435348 PRJEB66218_P_NODE_2433_length_2990_cov_6.847730_g2023_i0 PRJEB66218 2433 2990 6.84773 204.747127 SAR202 cluster bacterium 2030829 Bacteria Bacteria 91.7 1.54e-14   NR MBM3933357.1 2030829 g2023 i0 31.2 0.205685618729097 205 127 20.5 7 1242 631 254 445 MBM3933357.1 hypothetical protein [SAR202 cluster bacterium] diamond 615 91.7 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia       SAR202 cluster bacterium
27128380 27128380 PRJEB66218_P_NODE_151142_length_241_cov_0.905556_g148713_i0 PRJEB66218 151142 241 0.905556 2.18238996 SAR202 cluster bacterium 2030829 Bacteria Bacteria 64.7 6.79e-10   NR MCX8213165.1 2030829 g148713 i0 49.4 2.00414937759336 81 40 99.6 1 2 241 574 654 MCX8213165.1 fibronectin type III domain-containing protein [SAR202 cluster bacterium] diamond 483 64.7 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia       SAR202 cluster bacterium
30887128 30887128 PRJEB66218_P_NODE_211754_length_208_cov_0.884354_g209324_i0 PRJEB66218 211754 208 0.884354 1.83945632 SAR202 cluster bacterium 2030829 Bacteria Bacteria 49.7 8.58e-5   NR MQF87098.1 2030829 g209324 i0 47.8 2.8125 67 22 93.8 3 204 10 33 88 MQF87098.1 M1 family metallopeptidase [SAR202 cluster bacterium] diamond 585 49.7 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia       SAR202 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;