RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB66218", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJEB66218 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19260070 19260070 PRJEB66218_P_NODE_84196_length_342_cov_1.359431_g81769_i0 PRJEB66218 84196 342 1.359431 4.64925402 Lentisphaeria bacterium 2053569 Bacteria Bacteria 52.8 0.032   NTclustered gi|2189495548|gb|CP091727.1| 2053569 g81769 i0 100 0.0818713450292398 28 0 8 0 244 271 4716528 4716501 MAG: Lentisphaeria bacterium isolate nC33_lr_bin.207.fa chromosome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
20534967 20534967 PRJEB66218_P_NODE_65177_length_403_cov_1.611111_g62754_i0 PRJEB66218 65177 403 1.611111 6.49277733 uncultured Lentisphaerota bacterium 278095 Bacteria Bacteria 172 2.84e-38   NTclustered gi|164653414|gb|EU350875.1| 278095 g62754 i0 80.085 96.7196029776675 236 44 58 3 143 377 903 670 Uncultured Lentisphaerae bacterium clone HAL-T-18 16S ribosomal RNA gene, partial sequence blastn 38978 172 1 Bacteria PVC group Pseudomonadati Lentisphaerota         uncultured Lentisphaerota bacterium
28107816 28107816 PRJEB66218_P_NODE_42945_length_529_cov_1.420940_g40538_i0 PRJEB66218 42945 529 1.42094 7.5167726 Lentisphaeria bacterium 2053569 Bacteria Bacteria 58.2 2.43e-6   NR MCK5806550.1 2053569 g40538 i0 29.4 0.810964083175803 143 64 81.1 5 452 24 161 266 MCK5806550.1 hypothetical protein [Lentisphaeria bacterium] diamond 429 58.2 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
29048162 29048162 PRJEB66218_P_NODE_232328_length_204_cov_0.909091_g229898_i0 PRJEB66218 232328 204 0.909091 1.85454564 Lentisphaera 256846 Bacteria Bacteria 42.7 0.023   NR WP_007280170.1 256847 g229898 i0 44.2 1.26470588235294 43 22 63.2 1 7 135 377 417 WP_007280170.1 GspE/PulE family protein, partial [Lentisphaera araneosa] diamond 258 42.7 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Lentisphaerales Lentisphaeraceae Lentisphaera Lentisphaera araneosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;