RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB6584" and tax_phylum = "Chlorobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB6584 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25932137 25932137 PRJEB6584k_S_NODE_2732_length_197_cov_1611.697531_g2711_i0 PRJEB6584 2732 197 1611.697531 3175.04413607 Prosthecochloris sp. GSB1 281093 Bacteria Bacteria 152 1.64e-32   NTclustered gi|1227310175|gb|CP022571.1| 281093 g2711 i0 83.929 541.649746192893 168 17 81 7 1 160 131450 131285 Prosthecochloris sp. GSB1 strain TY Vent = GSB1 = Ty-1 chromosome, complete genome blastn 106705 152 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris sp. GSB1
33100111 33100111 PRJEB6584o_S_NODE_2518_length_445_cov_29.290244_g2419_i0 PRJEB6584 2518 445 29.290244 130.3415858 Pelodictyon luteolum 1100 Bacteria Bacteria 205 1.89e-65   NR WP_303680833.1 1100 g2419 i0 87 0.829213483146067 123 16 82.9 0 407 39 1 123 WP_303680833.1 MarR family EPS-associated transcriptional regulator [Pelodictyon luteolum] diamond 369 205 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Pelodictyon Pelodictyon luteolum
33150920 33150920 PRJEB6584b_S_NODE_512_length_400_cov_10.065753_g494_i0 PRJEB6584 512 400 10.065753 40.263012 Pelodictyon luteolum 1100 Bacteria Bacteria 197 8.17e-63   NR WP_303680833.1 1100 g494 i0 90.4 0.855 114 11 85.5 0 36 377 1 114 WP_303680833.1 MarR family EPS-associated transcriptional regulator [Pelodictyon luteolum] diamond 342 197 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Pelodictyon Pelodictyon luteolum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;