RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJEB6584", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 7 ✖

tax_kingdom 1

  • Metazoa · 7 ✖

tax_clade 1

bioproject 1

  • PRJEB6584 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25661230 25661230 PRJEB6584o_S_NODE_64442_length_160_cov_4.296000_g64334_i0 PRJEB6584 64442 160 4.296 6.8736 Patiria miniata 46514 Echinodermata other_Eukaryota 54.7 0.004   NTclustered gi|1944916053|ref|XM_038214868.1| 46514 g64334 i0 100 0.18125 29 0 18 0 32 60 912 884 PREDICTED: Patiria miniata nucleoplasmin-like protein ANO39 (LOC119739794), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
25795722 25795722 PRJEB6584e_S_NODE_891_length_268_cov_3.901288_g876_i0 PRJEB6584 891 268 3.901288 10.45545184 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 176 1.4e-39   NTclustered gi|1752383407|ref|XM_030994820.1| 7668 g876 i0 84.066 48.839552238806 182 29 68 0 66 247 1498 1317 PREDICTED: Strongylocentrotus purpuratus tubulin alpha-1 chain-like (LOC115928089), mRNA blastn 13089 176 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
26160745 26160745 PRJEB6584o_S_NODE_7997_length_303_cov_5.220149_g7889_i0 PRJEB6584 7997 303 5.220149 15.81705147 Echinoidea 7625 Echinodermata other_Eukaryota 185 2.6699999999999994e-42   NTclustered gi|2037967640|ref|XM_041629424.1| 7654 g7889 i0 88.312 44.6963696369637 154 18 51 0 149 302 1440 1287 PREDICTED: Lytechinus variegatus tubulin alpha-3 chain-like (LOC121431736), mRNA blastn 13543 185 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
33008497 33008497 PRJEB6584h_S_NODE_5099_length_245_cov_2.823810_g5037_i0 PRJEB6584 5099 245 2.82381 6.9183345 Metazoa 33208 Echinodermata other_Eukaryota 120 1.2699999999999998e-32   NR XP_030845498.1 7668 g5037 i0 81.7 7.82448979591837 71 13 86.9 0 3 215 78 148 XP_030845498.1 60S ribosomal protein L27a [Strongylocentrotus purpuratus] diamond 1917 120 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
33014490 33014490 PRJEB6584h_S_NODE_39772_length_167_cov_1.560606_g39710_i0 PRJEB6584 39772 167 1.560606 2.60621202 Asterias rubens 7604 Echinodermata other_Eukaryota 70.9 4.81e-14   NR XP_033640987.1 7604 g39710 i0 72.7 1.97604790419162 55 15 98.8 0 2 166 39 93 XP_033640987.1 ATPase inhibitor A, mitochondrial-like [Asterias rubens] diamond 330 70.9 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
33093951 33093951 PRJEB6584o_S_NODE_58158_length_163_cov_2.351562_g58050_i0 PRJEB6584 58158 163 2.351562 3.83304606 Metazoa 33208 Echinodermata other_Eukaryota 80.1 3.52e-17   NR XP_054756763.1 7653 g58050 i0 71.2 4.89570552147239 52 15 95.7 0 162 7 112 163 XP_054756763.1 large ribosomal subunit protein uL11-like [Lytechinus pictus] diamond 798 80.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus
33167760 33167760 PRJEB6584a_S_NODE_2632_length_229_cov_533.778351_g2612_i0 PRJEB6584 2632 229 533.778351 1222.35242379 Apostichopus japonicus 307972 Echinodermata other_Eukaryota 44.3 0.00857   NR PIK62516.1 307972 g2612 i0 47.5 1.89956331877729 40 18 48.5 1 109 219 30 69 PIK62516.1 hypothetical protein BSL78_00522 [Apostichopus japonicus] diamond 435 44.3 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Stichopodidae Apostichopus Apostichopus japonicus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;