RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJEB6584", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 7 ✖

tax_kingdom 1

  • Bacillati · 7 ✖

bioproject 1

  • PRJEB6584 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25659773 25659773 PRJEB6584h_S_NODE_682_length_436_cov_10.384040_g622_i0 PRJEB6584 682 436 10.38404 45.2744144 uncultured Mycoplasma sp. 167967 Bacteria Bacteria 69.4 4.18e-7   NTclustered gi|2449643714|gb|OQ518965.1| 167967 g622 i0 89.474 13.256880733945 57 3 12 3 16 69 78 22 Uncultured Mycoplasma sp. clone 1409-22 23S ribosomal RNA gene, partial sequence blastn 5780 69.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma uncultured Mycoplasma sp.
25660911 25660911 PRJEB6584o_S_NODE_34898_length_176_cov_2.531915_g34790_i0 PRJEB6584 34898 176 2.531915 4.4561704 uncultured Mycoplasmatota bacterium 658143 Bacteria Bacteria 54.7 0.004   NTclustered gi|2187163482|emb|OV788640.1| 658143 g34790 i0 100 0.164772727272727 29 0 16 0 126 154 915933 915961 uncultured Tenericutes bacterium isolate min17_bin11 genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Bacillati Mycoplasmatota         uncultured Mycoplasmatota bacterium
25932091 25932091 PRJEB6584h_S_NODE_7772_length_216_cov_625.790055_g7710_i0 PRJEB6584 7772 216 625.790055 1351.7065188 Acholeplasma sp. G383 398172 Bacteria Bacteria 58.4 4.1e-4   NTclustered gi|111283641|gb|DQ840503.1| 398172 g7710 i0 89.13 3.30555555555556 46 5 21 0 134 179 327 282 Acholeplasma sp. G383 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 714 58.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma sp. G383
26205114 26205114 PRJEB6584o_S_NODE_18366_length_209_cov_5403.436782_g18258_i0 PRJEB6584 18366 209 5403.436782 11293.18287438 Candidatus Phytoplasma solani 69896 Bacteria Bacteria 65.8 2.35e-6   NTclustered gi|2797120899|gb|CP103787.1| 69896 g18258 i0 84.507 1.86602870813397 71 5 33 6 95 162 289817 289884 Candidatus Phytoplasma solani strain c4 chromosome, complete genome blastn 390 65.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma solani
26205689 26205689 PRJEB6584o_S_NODE_5294_length_353_cov_4.125786_g5186_i0 PRJEB6584 5294 353 4.125786 14.56402458 Metamycoplasma subdolum 92407 Bacteria Bacteria 56.5 0.003   NTclustered gi|2619735232|gb|CP137846.1| 92407 g5186 i0 94.595 0.104815864022663 37 1 10 1 31 66 142621 142585 Metamycoplasma subdolum strain TB chromosome, complete genome blastn 37 56.5 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma subdolum
26206074 26206074 PRJEB6584o_S_NODE_9902_length_276_cov_151.024896_g9794_i0 PRJEB6584 9902 276 151.024896 416.82871296 uncultured Mycoplasmatota bacterium 658143 Bacteria Bacteria 191 5.15e-44   NTclustered gi|2187163482|emb|OV788640.1| 658143 g9794 i0 81.435 304.503623188406 237 40 86 4 34 269 373472 373705 uncultured Tenericutes bacterium isolate min17_bin11 genome assembly, chromosome: 1 blastn 84043 191 1 Bacteria   Bacillati Mycoplasmatota         uncultured Mycoplasmatota bacterium
26432065 26432065 PRJEB6584h_S_NODE_2055_length_325_cov_2.937931_g1993_i0 PRJEB6584 2055 325 2.937931 9.54827575 root 1 Root_unresolved Root_unresolved 75 6.52e-9   NTclustered gi|526641996|ref|NR_103993.1| 29501 g1993 i0 91.228 17.72 57 2 17 3 251 304 471 527 Mycoplasma haemofelis strain Langford 1 23S ribosomal RNA gene, complete sequence blastn 5759 75 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma haemofelis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;