RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJEB6584", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 6 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJEB6584 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25523775 25523775 PRJEB6584f_S_NODE_41_length_889_cov_24.277518_g39_i0 PRJEB6584 41 889 24.277518 215.82713502 Longimicrobiales bacterium 2910168 Bacteria Bacteria 102 8.78e-17   NTclustered gi|2575820295|emb|OY730414.1| 2910168 g39 i0 84.112 14.6062992125984 107 15 12 2 218 323 1273691 1273586 MAG: Longimicrobiales bacterium isolate 35361606-ee58-41ba-9638-b7483a57a1ce genome assembly, chromosome: 1 blastn 12985 102 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
25795809 25795809 PRJEB6584h_S_NODE_635_length_443_cov_393.029412_g575_i0 PRJEB6584 635 443 393.029412 1741.12029516 Longimicrobiales bacterium 2910168 Bacteria Bacteria 102 4.2e-17   NTclustered gi|2575820295|emb|OY730414.1| 2910168 g575 i0 84.112 29.3115124153499 107 15 24 2 204 309 1273691 1273586 MAG: Longimicrobiales bacterium isolate 35361606-ee58-41ba-9638-b7483a57a1ce genome assembly, chromosome: 1 blastn 12985 102 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
25932108 25932108 PRJEB6584i_S_NODE_348_length_377_cov_4.520468_g336_i0 PRJEB6584 348 377 4.520468 17.04216436 Longimicrobiales bacterium 2910168 Bacteria Bacteria 102 3.52e-17   NTclustered gi|2575820295|emb|OY730414.1| 2910168 g336 i0 84.112 34.4429708222812 107 15 28 2 141 246 1273586 1273691 MAG: Longimicrobiales bacterium isolate 35361606-ee58-41ba-9638-b7483a57a1ce genome assembly, chromosome: 1 blastn 12985 102 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
26339646 26339646 PRJEB6584a_S_NODE_1767_length_271_cov_472.792373_g1747_i0 PRJEB6584 1767 271 472.792373 1281.26733083 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 132 3.1e-26   NTclustered gi|2874254163|emb|OY970395.1| 412054 g1747 i0 78.319 310.756457564576 226 34 79 10 58 271 1607876 1607654 MAG: uncultured Gemmatimonadales bacterium isolate MFD05684.bin.c.1 genome assembly, chromosome: 1 blastn 84215 132 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
26476364 26476364 PRJEB6584e_S_NODE_40_length_682_cov_7.766615_g32_i0 PRJEB6584 40 682 7.766615 52.9683143 Longimicrobiales bacterium 2910168 Bacteria Bacteria 102 6.66e-17   NTclustered gi|2575820295|emb|OY730414.1| 2910168 g32 i0 84.112 19.0395894428152 107 15 16 2 313 418 1273586 1273691 MAG: Longimicrobiales bacterium isolate 35361606-ee58-41ba-9638-b7483a57a1ce genome assembly, chromosome: 1 blastn 12985 102 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
26478188 26478188 PRJEB6584p_S_NODE_3480_length_215_cov_2.605556_g3449_i0 PRJEB6584 3480 215 2.605556 5.6019454 Longimicrobiales bacterium 2910168 Bacteria Bacteria 102 1.86e-17   NTclustered gi|2575820295|emb|OY730414.1| 2910168 g3449 i0 84.112 60.3953488372093 107 15 49 2 73 178 1273586 1273691 MAG: Longimicrobiales bacterium isolate 35361606-ee58-41ba-9638-b7483a57a1ce genome assembly, chromosome: 1 blastn 12985 102 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;