RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJEB6584", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 12 ✖

tax_clade 1

  • Amoebozoa · 12 ✖

bioproject 1

  • PRJEB6584 · 12 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25523720 25523720 PRJEB6584d_S_NODE_16625_length_157_cov_1.450820_g16557_i0 PRJEB6584 16625 157 1.45082 2.2777874 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 135 1.25e-27   NTclustered gi|345452564|gb|JF694300.1| 1078836 g16557 i0 82.166 22.2866242038217 157 28 100 0 1 157 764 608 Cryptodifflugia operculata clone 4 actin gene, partial cds blastn 3499 135 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
25524754 25524754 PRJEB6584o_S_NODE_26233_length_187_cov_4.993421_g26125_i0 PRJEB6584 26233 187 4.993421 9.33769727 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 278 2.43e-70   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g26125 i0 98.718 81.0374331550802 156 2 83 0 1 156 2662 2507 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15154 278 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
25659746 25659746 PRJEB6584h_S_NODE_2770_length_298_cov_4.182510_g2708_i0 PRJEB6584 2770 298 4.18251 12.4638798 Amoeba proteus 5775 Tubulinea other_Eukaryota 145 4.44e-30   NTclustered gi|173717|gb|M19222.1|AMPRRM 5775 g2708 i0 92.233 40.4664429530201 103 7 35 1 6 108 417 316 A.proteus 28S large subunit rRNA, 5' end blastn 12059 145 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
25932021 25932021 PRJEB6584h_S_NODE_10196_length_202_cov_1.610778_g10134_i0 PRJEB6584 10196 202 1.610778 3.25377156 Spumochlamys perforata 675831 Tubulinea other_Eukaryota 63.9 8.12e-6   NTclustered gi|259595675|gb|FJ705339.1| 675831 g10134 i0 97.297 15.9356435643564 37 1 18 0 86 122 897 861 Spumochlamys perforata clone 2504 18S ribosomal RNA gene, partial sequence blastn 3219 63.9 1 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys perforata
25932086 25932086 PRJEB6584h_S_NODE_7380_length_219_cov_18.260870_g7318_i0 PRJEB6584 7380 219 18.26087 39.9913053 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 322 1.34e-83   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g7318 i0 100 72.3698630136986 174 0 79 0 24 197 2667 2494 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15849 322 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
25933444 25933444 PRJEB6584o_S_NODE_58004_length_163_cov_5.460938_g57896_i0 PRJEB6584 58004 163 5.460938 8.90132894 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 291 2.64e-74   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g57896 i0 98.773 1.5521472392638 163 2 100 0 1 163 2350 2512 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 253 291 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
26024604 26024604 PRJEB6584p_S_NODE_2420_length_228_cov_5.709845_g2389_i0 PRJEB6584 2420 228 5.709845 13.0184466 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 405 1.35e-108   NTclustered gi|300078496|gb|GU001158.1| 5778 g2389 i0 99.111 43.0043859649123 225 2 99 0 4 228 1220 996 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9805 405 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
26160164 26160164 PRJEB6584a_S_NODE_1701_length_276_cov_9.867220_g1681_i0 PRJEB6584 1701 276 9.86722 27.2335272 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 488 1.6299999999999995e-133   NTclustered gi|300078496|gb|GU001158.1| 5778 g1681 i0 98.551 37.8442028985507 276 4 100 0 1 276 947 1222 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10445 488 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
26204333 26204333 PRJEB6584h_S_NODE_20918_length_178_cov_3.391608_g20856_i0 PRJEB6584 20918 178 3.391608 6.03706224 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 324 2.89e-84   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g20856 i0 99.438 1.50561797752809 178 1 100 0 1 178 2514 2337 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 268 324 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
26296508 26296508 PRJEB6584o_S_NODE_9422_length_282_cov_29.720648_g9314_i0 PRJEB6584 9422 282 29.720648 83.81222736 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 494 3.6e-135   NTclustered gi|300078496|gb|GU001158.1| 5778 g9314 i0 98.227 37.1879432624113 282 5 100 0 1 282 941 1222 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10487 494 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
26340985 26340985 PRJEB6584o_S_NODE_20703_length_200_cov_2.575758_g20595_i0 PRJEB6584 20703 200 2.575758 5.151516 Cryptodifflugia oviformis 1165352 Tubulinea other_Eukaryota 337 4.28e-88   NTclustered gi|2517949732|gb|OR125031.1| 1165352 g20595 i0 97 73.64 200 6 100 0 1 200 967 768 Cryptodifflugia oviformis isolate strain_6 small subunit ribosomal RNA gene, partial sequence blastn 14728 337 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia oviformis
26568246 26568246 PRJEB6584n_S_NODE_264_length_263_cov_9.767544_g258_i0 PRJEB6584 264 263 9.767544 25.68864072 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 435 2.04e-117   NTclustered gi|300078496|gb|GU001158.1| 5778 g258 i0 98 21.2091254752852 250 5 95 0 14 263 1190 941 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5578 435 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;