RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB65329" and tax_phylum = "Bacillota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB65329 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6097075 6097075 PRJEB65329_S_NODE_17805_length_153_cov_4.733871_g17643_i0 PRJEB65329 17805 153 4.733871 7.24282263 root 1 Root_unresolved Root_unresolved 283 4.0799999999999995e-72   NTclustered gi|1796972337|gb|CP033085.1| 1280 g17643 i0 100 55.5751633986928 153 0 100 0 1 153 2681137 2681289 Staphylococcus aureus strain WH3018 chromosome blastn 8503 283 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus
15432637 15432637 PRJEB65329_S_NODE_7133_length_276_cov_4.562753_g6971_i0 PRJEB65329 7133 276 4.562753 12.59319828 root 1 Root_unresolved Root_unresolved 174 1.16e-52   NR WP_321130271.1 1496 g6971 i0 92.4 2 92 7 100 0 276 1 99 190 WP_321130271.1 GTP-binding protein, partial [Clostridioides difficile] diamond 552 174 1 Bacteria   Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Clostridioides Clostridioides difficile
27058514 27058514 PRJEB65329_S_NODE_18302_length_151_cov_2.934426_g18140_i0 PRJEB65329 18302 151 2.934426 4.43098326 root 1 Root_unresolved Root_unresolved 90.1 8.480000000000001e-21   NR MCJ0157548.1 1496 g18140 i0 76 13.8675496688742 50 12 99.3 0 150 1 99 148 MCJ0157548.1 40S ribosomal protein S3a/S1 [Clostridioides difficile] diamond 2094 90.9 0.991199119911991 Bacteria   Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Clostridioides Clostridioides difficile
32846572 32846572 PRJEB65329_S_NODE_12060_length_193_cov_4.310976_g11898_i0 PRJEB65329 12060 193 4.310976 8.32018368 Paenibacillus woosongensis 307580 Bacteria Bacteria 40 0.0299   NR WP_306422036.1 307580 g11898 i0 44.2 0.808290155440414 52 26 77.7 2 26 175 1 51 WP_306422036.1 hypothetical protein [Paenibacillus woosongensis] diamond 156 40 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus woosongensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;