RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB65329", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB65329 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2680142 2680142 PRJEB65329_S_NODE_13683_length_179_cov_2.260000_g13521_i0 PRJEB65329 13683 179 2.26 4.0454 Plasmodium coatneyi 208452 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.004   NTclustered gi|1139863046|ref|XM_020059359.1| 208452 g13521 i0 100 0.162011173184358 29 0 16 0 112 140 1102 1130 Plasmodium coatneyi Calcium-dependent protein kinase 3 partial mRNA blastn 29 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium coatneyi
19255629 19255629 PRJEB65329_S_NODE_16296_length_161_cov_2.674242_g16134_i0 PRJEB65329 16296 161 2.674242 4.30552962 Toxoplasma gondii 5811 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.001   NTclustered gi|820696656|tpe|LN714493.1| 432359 g16134 i0 100 0.186335403726708 30 0 19 0 86 115 2349734 2349705 TPA_asm: Toxoplasma gondii VEG, chromosome chrIV, complete genome blastn 30 56.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;