RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJEB65329" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJEB65329 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29118408 29118408 PRJEB65329_S_NODE_12389_length_190_cov_3.055901_g12227_i0 PRJEB65329 12389 190 3.055901 5.8062119 Phycisphaerae bacterium 2026778 Bacteria Bacteria 43.1 0.0134   NR MAC74229.1 2026778 g12227 i0 41.3 0.726315789473684 46 25 72.6 1 50 187 3 46 MAC74229.1 hypothetical protein [Phycisphaerae bacterium] diamond 138 43.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae       Phycisphaerae bacterium
29497055 29497055 PRJEB65329_S_NODE_15970_length_163_cov_2.343284_g15808_i0 PRJEB65329 15970 163 2.343284 3.81955292 Planctomycetota bacterium 2026780 Bacteria Bacteria 42 0.0238   NR MBA4685306.1 2026780 g15808 i0 48.8 0.791411042944785 43 22 79.1 0 22 150 182 224 MBA4685306.1 glycosyltransferase family 2 protein [Planctomycetota bacterium] diamond 129 42 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
30507879 30507879 PRJEB65329_S_NODE_10353_length_214_cov_2.535135_g10191_i0 PRJEB65329 10353 214 2.535135 5.4251889 Isosphaeraceae bacterium 2691532 Bacteria Bacteria 40.8 0.0247   NR HKM54239.1 2691532 g10191 i0 46.3 0.574766355140187 41 17 57.5 2 54 176 37 72 HKM54239.1 hypothetical protein [Isosphaeraceae bacterium] diamond 123 40.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae   Isosphaeraceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;