RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB65329", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJEB65329 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1404515 1404515 PRJEB65329_S_NODE_10582_length_211_cov_2.016484_g10420_i0 PRJEB65329 10582 211 2.016484 4.25478124 Schistosoma haematobium 6185 Platyhelminthes Platyhelminthes 56.5 0.001   NTclustered gi|2318748324|ref|XM_051210181.1| 6185 g10420 i0 96.97 0.554502369668246 33 1 16 0 140 172 1685 1653 Schistosoma haematobium Ubiquitin-protein ligase E3C (UBE3C), mRNA blastn 117 56.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma haematobium
15021783 15021783 PRJEB65329_S_NODE_14552_length_172_cov_2.902098_g14390_i0 PRJEB65329 14552 172 2.902098 4.99160856 Metazoa 33208 Platyhelminthes Platyhelminthes 318 1.2899999999999999e-82   NTclustered gi|60687563|gb|AY914894.1| 6182 g14390 i0 100 100 172 0 100 0 1 172 606 435 Schistosoma japonicum unknown mRNA blastn 17200 318 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
20120450 20120450 PRJEB65329_S_NODE_11616_length_198_cov_2.579882_g11454_i0 PRJEB65329 11616 198 2.579882 5.10816636 Metazoa 33208 Platyhelminthes Platyhelminthes 366 5.4e-97   NTclustered gi|60687563|gb|AY914894.1| 6182 g11454 i0 100 100 198 0 100 0 1 198 458 261 Schistosoma japonicum unknown mRNA blastn 19800 366 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;