RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJEB65099", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 7 ✖

tax_phylum 1

  • Myxococcota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJEB65099 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4821921 4821921 PRJEB65099_P_NODE_4044_length_278_cov_2.273171_g3939_i0 PRJEB65099 4044 278 2.273171 6.31941538 Sorangium 39643 Bacteria Bacteria 486 5.919999999999998e-133   NTclustered gi|1566478966|gb|CP012672.1| 56 g3939 i0 98.201 7.98920863309352 278 5 100 0 1 278 10560050 10559773 Sorangium cellulosum strain So ce836 chromosome, complete genome blastn 2221 486 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
6097047 6097047 PRJEB65099_P_NODE_6505_length_244_cov_0.912281_g6400_i0 PRJEB65099 6505 244 0.912281 2.22596564 Myxococcota bacterium 2818507 Bacteria Bacteria 107 1.7e-26   NR MDP9150360.1 2818507 g6400 i0 61.7 0.995901639344262 81 31 99.6 0 2 244 136 216 MDP9150360.1 HAMP domain-containing histidine kinase [Myxococcota bacterium] diamond 243 107 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
7782327 7782327 PRJEB65099_P_NODE_5487_length_250_cov_0.881356_g5382_i0 PRJEB65099 5487 250 0.881356 2.20339 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 186 5.17e-57   NR MCF8119189.1 2026735 g5382 i0 100 0.996 83 0 99.6 0 250 2 85 167 MCF8119189.1 formylglycine-generating enzyme family protein [Deltaproteobacteria bacterium] diamond 249 186 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
14158343 14158343 PRJEB65099_P_NODE_3212_length_315_cov_2.214876_g3107_i0 PRJEB65099 3212 315 2.214876 6.9768594 Sorangium cellulosum 56 Bacteria Bacteria 527 4.02e-145   NTclustered gi|520999024|gb|CP003969.1| 1254432 g3107 i0 96.825 6.02222222222222 315 10 100 0 1 315 5212428 5212114 Sorangium cellulosum So0157-2, complete genome blastn 1897 527 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
29150135 29150135 PRJEB65099_P_NODE_6129_length_246_cov_0.901734_g6024_i0 PRJEB65099 6129 246 0.901734 2.21826564 Polyangiales bacterium 3034171 Bacteria Bacteria 57 3.78e-7   NR HMI93067.1 3034171 g6024 i0 38.2 1.71951219512195 76 37 90.2 2 222 1 618 685 HMI93067.1 hypothetical protein [Polyangiales bacterium] diamond 423 57 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
31638610 31638610 PRJEB65099_P_NODE_4696_length_258_cov_1.654054_g4591_i0 PRJEB65099 4696 258 1.654054 4.26745932 Myxococcia 32015 Bacteria Bacteria 129 9.5e-33   NR MDH3655262.1 2026763 g4591 i0 68.6 10 86 27 100 0 1 258 519 604 MDH3655262.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase [Myxococcales bacterium] diamond 2580 130 0.992307692307692 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31986550 31986550 PRJEB65099_P_NODE_6038_length_246_cov_0.901734_g5933_i0 PRJEB65099 6038 246 0.901734 2.21826564 Pseudomonadati 3379134 Bacteria Bacteria 74.3 1.37e-13   NR HEY6556180.1 2268199 g5933 i0 50.6 2.89024390243902 79 39 96.3 0 244 8 195 273 HEY6556180.1 Ku protein [Polyangiaceae bacterium] diamond 711 74.7 0.994645247657296 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;