RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB65099", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJEB65099 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17981512 17981512 PRJEB65099_P_NODE_6935_length_242_cov_0.923077_g6830_i0 PRJEB65099 6935 242 0.923077 2.23384634 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 370 5.3e-98   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g6830 i0 94.215 104.652892561983 242 14 100 0 1 242 1230266 1230507 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 25326 370 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
26590414 26590414 PRJEB65099_P_NODE_5321_length_251_cov_0.876404_g5216_i0 PRJEB65099 5321 251 0.876404 2.19977404 Chthoniobacter sp. 2510640 Bacteria Bacteria 72.4 6.83e-14   NR MDB6151496.1 2510640 g5216 i0 47.4 0.908366533864542 76 37 90.8 1 250 23 57 129 MDB6151496.1 hypothetical protein [Chthoniobacter sp.] diamond 228 72.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.
29150134 29150134 PRJEB65099_P_NODE_1389_length_524_cov_0.895787_g1284_i0 PRJEB65099 1389 524 0.895787 4.69392388 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 47 0.0142   NR MEY4687148.1 2026799 g1284 i0 34.3 0.784351145038168 137 65 74.4 6 63 452 198 316 MEY4687148.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 411 47 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30444794 30444794 PRJEB65099_P_NODE_6413_length_244_cov_1.461988_g6308_i0 PRJEB65099 6413 244 1.461988 3.56725072 Verrucomicrobiales bacterium VVV1 2015575 Bacteria Bacteria 109 1.32e-25   NR OYV05812.1 2015575 g6308 i0 88.9 0.663934426229508 54 6 66.4 0 3 164 631 684 OYV05812.1 MAG: hypothetical protein CFE26_09630 [Verrucomicrobiales bacterium VVV1] diamond 162 109 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium VVV1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;