RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJEB65099" and tax_clade = "Discoba"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 5 ✖

bioproject 1

  • PRJEB65099 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2680066 2680066 PRJEB65099_P_NODE_6503_length_244_cov_0.912281_g6398_i0 PRJEB65099 6503 244 0.912281 2.22596564 Acrasis kona 1008807 Heterolobosea other_Eukaryota 108 1.85e-27   NR KAL0484198.1 1008807 g6398 i0 72.2 0.885245901639344 72 20 88.5 0 240 25 144 215 KAL0484198.1 ribosomal protein L10 [Acrasis kona] diamond 216 108 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
6097030 6097030 PRJEB65099_P_NODE_1005_length_635_cov_10.379004_g901_i0 PRJEB65099 1005 635 10.379004 65.9066754 Vrihiamoeba 864186 Heterolobosea other_Eukaryota 985 0   NTclustered gi|254587473|dbj|AB513360.1| 660567 g901 i0 94.646 41.6818897637795 635 34 100 0 1 635 1771 1137 Vrihiamoeba italica gene for small subunit ribosomal RNA, partial sequence blastn 26468 994 0.990945674044266 Eukaryota Discoba   Heterolobosea     Gruberellidae Vrihiamoeba Vrihiamoeba italica
9057202 9057202 PRJEB65099_P_NODE_1128_length_591_cov_7.841699_g1023_i0 PRJEB65099 1128 591 7.841699 46.34444109 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 388 3.92e-103   NTclustered gi|2618963742|gb|OR769034.1| 5762 g1023 i0 78.887 50.7123519458545 611 101 100 20 1 591 4750 5352 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 29971 388 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
10332955 10332955 PRJEB65099_P_NODE_289_length_1174_cov_11.613987_g231_i0 PRJEB65099 289 1174 11.613987 136.34820738 Heterolobosea sp. HGG1 1237086 Heterolobosea other_Eukaryota 1604 0   NTclustered gi|407750695|gb|JX441981.1| 1237086 g231 i0 91.363 39.0289608177172 1181 88 100 13 1 1174 1188 15 Heterolobosea sp. HGG1 18S ribosomal RNA gene, partial sequence blastn 45820 1604 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp. HGG1
10332965 10332965 PRJEB65099_P_NODE_49_length_2145_cov_7.979247_g40_i0 PRJEB65099 49 2145 7.979247 171.15484815 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 348 2.53e-90   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g40 i0 78.269 13.0480186480186 566 105 30 13 842 1396 3283 2725 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 27988 348 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;