RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB64798" and tax_phylum = "Prasinodermophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Prasinodermophyta · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB64798 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
127335 127335 PRJEB64798_P_NODE_169541_length_179_cov_2.061538_g167775_i0 PRJEB64798 169541 179 2.061538 3.69015302 Palmophyllum crassum 1615899 Plants Plants 89.7 4.39e-19   NR YP_009340876.1 1615899 g167775 i0 69 0.972067039106145 58 18 97.2 0 174 1 601 658 YP_009340876.1 photosystem I P700 chlorophyll a apoprotein A1 [Palmophyllum crassum] diamond 174 89.7 1 Eukaryota   Viridiplantae Prasinodermophyta Palmophyllophyceae Palmophyllales Palmophyllaceae Palmophyllum Palmophyllum crassum
6096497 6096497 PRJEB64798_P_NODE_243385_length_154_cov_3.057143_g241619_i0 PRJEB64798 243385 154 3.057143 4.70800022 Prasinoderma 156132 Plants Plants 137 3.39e-28   NTclustered gi|371782111|emb|HE610143.1| 156133 g241619 i0 91.089 36.4025974025974 101 9 98 0 54 154 783 883 Prasinoderma coloniale partial 28S rRNA gene, strain CCMP1413 blastn 5606 137 1 Eukaryota   Viridiplantae Prasinodermophyta Prasinodermophyceae Prasinodermales Prasinodermaceae Prasinoderma Prasinoderma coloniale
23945301 23945301 PRJEB64798_P_NODE_155119_length_186_cov_1.445255_g153353_i0 PRJEB64798 155119 186 1.445255 2.6881743 root 1 Root_unresolved Root_unresolved 82.4 2.03e-11   NTclustered gi|290770777|emb|FN563089.1| 156133 g153353 i0 78.462 31.7741935483871 130 24 69 4 53 181 2322 2196 Prasinoderma coloniale plastid 16S rRNA gene (partial), ITS1, tRNA-Ile gene, tRNA-Ala gene and 23S rRNA gene (partial), strain CCMP 1413 blastn 5910 82.4 1 Eukaryota   Viridiplantae Prasinodermophyta Prasinodermophyceae Prasinodermales Prasinodermaceae Prasinoderma Prasinoderma coloniale
29805639 29805639 PRJEB64798_P_NODE_184991_length_172_cov_4.821138_g183225_i0 PRJEB64798 184991 172 4.821138 8.29235736 Viridiplantae 33090 Plants Plants 84.3 2.02e-17   NR QGN73963.1 110672 g183225 i0 72.7 37.3779069767442 55 15 95.9 0 6 170 33 87 QGN73963.1 apocytochrome b [Prasinococcus sp. CCMP1194] diamond 6429 85.1 0.990599294947121 Eukaryota   Viridiplantae Prasinodermophyta Palmophyllophyceae Prasinococcales Prasinococcaceae Prasinococcus Prasinococcus sp. CCMP1194

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;