RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJEB64798" and tax_phylum = "Nitrospinota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nitrospinota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJEB64798 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7780979 7780979 PRJEB64798_P_NODE_251607_length_151_cov_5.480392_g249841_i0 PRJEB64798 251607 151 5.480392 8.27539192 Nitrospinaceae bacterium 2358456 Bacteria Bacteria 71.3 3.4e-8   NTclustered gi|2107941210|gb|CP070799.1| 2358456 g249841 i0 90.566 2.43708609271523 53 5 35 0 9 61 507665 507613 MAG: Nitrospinaceae bacterium isolate bin1391 chromosome blastn 368 71.3 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae   Nitrospinaceae bacterium
17979201 17979201 PRJEB64798_P_NODE_186795_length_171_cov_11.647541_g185029_i0 PRJEB64798 186795 171 11.647541 19.91729511 Candidatus Nitrohelix vancouverensis 2705534 Bacteria Bacteria 106 1.08e-18   NTclustered gi|1938442527|gb|CP048620.1| 2705534 g185029 i0 78.313 13.8538011695906 166 34 96 2 1 165 2187026 2187190 MAG: Candidatus Nitrohelix vancouverensis isolate VA-1 chromosome blastn 2369 106 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Candidatus Nitrohelix Candidatus Nitrohelix vancouverensis
28455287 28455287 PRJEB64798_P_NODE_86026_length_213_cov_2.579268_g84260_i0 PRJEB64798 86026 213 2.579268 5.49384084 Nitrospinota bacterium 2026769 Bacteria Bacteria 46.6 8.37e-4   NR MBE18078.1 2026769 g84260 i0 36.7 2.83098591549296 60 35 84.5 1 20 199 10 66 MBE18078.1 hypothetical protein [Nitrospinota bacterium] diamond 603 46.6 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
28707570 28707570 PRJEB64798_P_NODE_113707_length_209_cov_6.618750_g111941_i0 PRJEB64798 113707 209 6.61875 13.8331875 Nitrospinota bacterium 2026769 Bacteria Bacteria 60.8 8.3e-9   NR MBI4379233.1 2026769 g111941 i0 63.4 2.94258373205742 41 15 58.9 0 123 1 107 147 MBI4379233.1 thioredoxin-disulfide reductase [Nitrospinota bacterium] diamond 615 60.8 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
30792078 30792078 PRJEB64798_P_NODE_247654_length_152_cov_10.475728_g245888_i0 PRJEB64798 247654 152 10.475728 15.92310656 Nitrospinota bacterium 2026769 Bacteria Bacteria 63.5 4.85e-10   NR MDH3257283.1 2026769 g245888 i0 78.9 0.75 38 7 75 1 145 32 216 252 MDH3257283.1 Ig-like domain-containing protein [Nitrospinota bacterium] diamond 114 63.5 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
32081509 32081509 PRJEB64798_P_NODE_207738_length_165_cov_4.250000_g205972_i0 PRJEB64798 207738 165 4.25 7.0125 Pseudomonadati 3379134 Bacteria Bacteria 102 1.56e-23   NR MDE1045218.1 2358456 g205972 i0 84.9 6.74545454545455 53 8 96.4 0 7 165 251 303 MDE1045218.1 glutamine--tRNA ligase/YqeY domain fusion protein [Nitrospinaceae bacterium] diamond 1113 102 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae   Nitrospinaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;