RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJEB6097" and tax_phylum = "Ascomycota"

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tax_superkingdom 1

tax_phylum 1

  • Ascomycota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB6097 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7778086 7778086 PRJEB6097_S_NODE_6287_length_164_cov_1.689922_g6233_i0 PRJEB6097 6287 164 1.689922 2.77147208 Ophiostoma torulosum 96403 Fungi Fungi 303 3.42e-78   NTclustered gi|325513885|gb|HQ343317.1| 96403 g6233 i0 100 96.640243902439 164 0 100 0 1 164 3275 3112 Ophiostoma torulosum strain CBS 730.71 small subunit ribosomal RNA gene, complete sequence; and reverse transcriptase and double motif LAGLIDADG homing endonuclease genes, complete cds; mitochondrial blastn 15849 303 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Ophiostomatales Ophiostomataceae Ophiostoma Ophiostoma torulosum
9920474 9920474 PRJEB6097_S_NODE_5848_length_181_cov_4.993151_g5794_i0 PRJEB6097 5848 181 4.993151 9.03760331 Saccharomyces 4930 Fungi Fungi 292 8.32e-75   NTclustered gi|2161760974|gb|OL763550.1| 4932 g5794 i0 99.379 88.9005524861878 161 1 89 0 1 161 277 117 Saccharomyces cerevisiae clone S5-19 large subunit ribosomal RNA gene, partial sequence blastn 16091 292 1 Eukaryota Opisthokonta Fungi Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae
12471248 12471248 PRJEB6097_S_NODE_110_length_573_cov_21970.540892_g56_i0 PRJEB6097 110 573 21970.540892 125891.19931116 Eukaryota 2759 Fungi Fungi 636 1.2299999999999998e-177   NTclustered gi|514829572|gb|KC771883.1| 4929 g56 i0 100 56.1099476439791 344 0 60 0 230 573 368 25 Meyerozyma guilliermondii strain SNP3S 26S ribosomal RNA gene, partial sequence blastn 32151 636 1 Eukaryota Opisthokonta Fungi Ascomycota Pichiomycetes Serinales Debaryomycetaceae Meyerozyma Meyerozyma guilliermondii
16294944 16294944 PRJEB6097_S_NODE_513_length_432_cov_29761.506297_g459_i0 PRJEB6097 513 432 29761.506297 128569.70720304 Opisthokonta 33154 Fungi Fungi 374 7.829999999999997e-99   NTclustered gi|66805490|gb|DQ008146.1| 29917 g459 i0 99.512 47.4537037037037 205 1 47 0 1 205 193 397 Cladosporium cladosporioides strain CBS 109501 28S large subunit ribosomal RNA gene, partial sequence blastn 20500 374 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Cladosporiales Cladosporiaceae Cladosporium Cladosporium cladosporioides
20526523 20526523 PRJEB6097_S_NODE_5277_length_227_cov_4.234375_g5223_i0 PRJEB6097 5277 227 4.234375 9.61203125 Meyerozyma guilliermondii 4929 Fungi Fungi 217 6.78e-52   NTclustered gi|146421244|ref|XM_001486523.1| 294746 g5223 i0 90.741 115.638766519824 162 15 71 0 1 162 1207 1368 Meyerozyma guilliermondii ATCC 6260 ubiquitin (PGUG_02244), partial mRNA blastn 26250 217 1 Eukaryota Opisthokonta Fungi Ascomycota Pichiomycetes Serinales Debaryomycetaceae Meyerozyma Meyerozyma guilliermondii
23944600 23944600 PRJEB6097_S_NODE_119_length_564_cov_21758.034026_g65_i0 PRJEB6097 119 564 21758.034026 122715.31190664 Eukaryota 2759 Fungi Fungi 617 4.37e-172   NTclustered gi|514829572|gb|KC771883.1| 4929 g65 i0 100 54.6879432624113 334 0 59 0 1 334 25 358 Meyerozyma guilliermondii strain SNP3S 26S ribosomal RNA gene, partial sequence blastn 30844 617 1 Eukaryota Opisthokonta Fungi Ascomycota Pichiomycetes Serinales Debaryomycetaceae Meyerozyma Meyerozyma guilliermondii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;