RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB6097" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJEB6097 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6503821 6503821 PRJEB6097_S_NODE_466_length_443_cov_28876.125000_g412_i0 PRJEB6097 466 443 28876.125 127921.23375 Cetobacterium somerae 188913 Bacteria Bacteria 366 1.3499999999999996e-96   NTclustered gi|2666488225|gb|CP143319.1| 188913 g412 i0 98.104 225.516930022573 211 3 48 1 217 427 1318779 1318988 Cetobacterium somerae strain ceto chromosome, complete genome blastn 99904 366 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
19251128 19251128 PRJEB6097_S_NODE_5556_length_200_cov_1.939394_g5502_i0 PRJEB6097 5556 200 1.939394 3.878788 Leptotrichia shahii 157691 Bacteria Bacteria 364 1.96e-96   NTclustered gi|1708568515|dbj|AP019827.1| 157691 g5502 i0 99.5 155.125 200 1 100 0 1 200 105257 105058 Leptotrichia shahii JCM16776 DNA, complete genome blastn 31025 364 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia shahii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;