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contig_metadata

17 rows where bioproject = "PRJEB6097" and tax_clade = "Sar"

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tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Sar · 17 ✖

bioproject 1

  • PRJEB6097 · 17 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1400055 1400055 PRJEB6097_S_NODE_2542_length_282_cov_14.599190_g2488_i0 PRJEB6097 2542 282 14.59919 41.1697158 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 520 5.93e-143   NTclustered gi|238617602|gb|FJ973377.1| 188950 g2488 i0 100 99.8971631205674 281 0 99 0 2 282 328 48 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 28171 520 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
3542810 3542810 PRJEB6097_S_NODE_5663_length_192_cov_4.598726_g5609_i0 PRJEB6097 5663 192 4.598726 8.82955392 Poterioochromonas 88166 SAR_Eukaryotes SAR_Eukaryotes 355 1.13e-93   NTclustered gi|323690576|gb|GU935635.1| 88167 g5609 i0 100 100.807291666667 192 0 100 0 1 192 1537 1346 Poteriochroomonas malhamensis strain SAG 933.1c 28S ribosomal RNA gene, partial sequence blastn 19355 355 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
6095436 6095436 PRJEB6097_S_NODE_6245_length_165_cov_3.800000_g6191_i0 PRJEB6097 6245 165 3.8 6.27 Cercomonadidae 45108 SAR_Eukaryotes SAR_Eukaryotes 305 9.59e-79   NTclustered gi|1695780|gb|U42448.1|CAU42448 45110 g6191 i0 100 100.315151515152 165 0 100 0 1 165 379 215 Cercomonas ATCC50316 18S ribosomal RNA gene, complete sequence blastn 16552 305 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas sp. ATCC 50316
6095437 6095437 PRJEB6097_S_NODE_6445_length_159_cov_2.258065_g6391_i0 PRJEB6097 6445 159 2.258065 3.59032335 Poterioochromonas 88166 SAR_Eukaryotes SAR_Eukaryotes 294 1.98e-75   NTclustered gi|323690576|gb|GU935635.1| 88167 g6391 i0 100 100.358490566038 159 0 100 0 1 159 1180 1338 Poteriochroomonas malhamensis strain SAG 933.1c 28S ribosomal RNA gene, partial sequence blastn 15957 294 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
7369769 7369769 PRJEB6097_S_NODE_506_length_434_cov_29013.070175_g452_i0 PRJEB6097 506 434 29013.070175 125916.7245595 root 1 Root_unresolved Root_unresolved 392 2.1699999999999998e-104   NTclustered gi|10832|emb|X54512.1| 5911 g452 i0 99.535 44.241935483871 215 1 50 0 220 434 8330 8116 T. thermophila rdn A+ gene for pre-RNA, 17S rRNA, 5.8S rRNA, 26S rRNA blastn 19201 392 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
9052843 9052843 PRJEB6097_S_NODE_4748_length_248_cov_3.389671_g4694_i0 PRJEB6097 4748 248 3.389671 8.40638408 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 370 5.45e-98   NTclustered gi|2088238071|ref|NC_056910.1| 88167 g4694 i0 99.507 75.3266129032258 203 1 82 0 1 203 15712 15510 Poterioochromonas malhamensis strain SZCZR2049 plastid, complete genome blastn 18681 370 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
12879228 12879228 PRJEB6097_S_NODE_6631_length_154_cov_2.075630_g6577_i0 PRJEB6097 6631 154 2.07563 3.1964702 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 169 1.2e-37   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g6577 i0 95.283 44.7272727272727 106 5 69 0 3 108 3751 3856 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 6888 169 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
14153975 14153975 PRJEB6097_S_NODE_192_length_505_cov_25064.421277_g138_i0 PRJEB6097 192 505 25064.421277 126575.32744885 Vorticella sp. 4 JG-2011 1295638 SAR_Eukaryotes SAR_Eukaryotes 488 3.179999999999999e-133   NTclustered gi|512134943|gb|JX178902.1| 1295638 g138 i0 98.556 54.8554455445545 277 3 55 1 230 505 1396 1120 Vorticella sp. 4 JG-2011 clone 2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 27702 488 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. 4 JG-2011
15427984 15427984 PRJEB6097_S_NODE_4873_length_245_cov_3.785714_g4819_i0 PRJEB6097 4873 245 3.785714 9.2749993 Helicotheca tamesis 374047 SAR_Eukaryotes SAR_Eukaryotes 86.1 2.18e-12   NTclustered gi|2248495790|ref|NC_063455.1| 374047 g4819 i0 84.444 4.26530612244898 90 11 36 3 131 219 5273 5360 Helicotheca tamesis isolate Qingdao in China mitochondrion, complete genome blastn 1045 86.1 1 Eukaryota Sar   Bacillariophyta Mediophyceae Lithodesmiales Lithodesmiaceae Helicotheca Helicotheca tamesis
16702260 16702260 PRJEB6097_S_NODE_434_length_450_cov_28391.645783_g380_i0 PRJEB6097 434 450 28391.645783 127762.4060235 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 401 3.759999999999999e-107   NTclustered gi|323690576|gb|GU935635.1| 88167 g380 i0 100 27.8111111111111 217 0 48 0 234 450 2022 1806 Poteriochroomonas malhamensis strain SAG 933.1c 28S ribosomal RNA gene, partial sequence blastn 12515 401 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
17977161 17977161 PRJEB6097_S_NODE_6275_length_164_cov_3.410853_g6221_i0 PRJEB6097 6275 164 3.410853 5.59379892 Colponema vietnamica 1492817 SAR_Eukaryotes SAR_Eukaryotes 156 1.01e-33   NTclustered gi|1280963088|gb|MG202006.1| 1492817 g6221 i0 91.304 111.707317073171 115 9 70 1 51 164 11280 11166 Colponema vietnamica strain Colp-7a mitochondrion blastn 18320 156 1 Eukaryota Sar       Colponemida Colponemidia Colponema Colponema vietnamica
18843899 18843899 PRJEB6097_S_NODE_515_length_432_cov_29693.395466_g461_i0 PRJEB6097 515 432 29693.395466 128275.46841312 root 1 Root_unresolved Root_unresolved 374 7.829999999999997e-99   NTclustered gi|10832|emb|X54512.1| 5911 g461 i0 98.14 42.6759259259259 215 2 49 2 1 213 8116 8330 T. thermophila rdn A+ gene for pre-RNA, 17S rRNA, 5.8S rRNA, 26S rRNA blastn 18436 374 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
22669183 22669183 PRJEB6097_S_NODE_458_length_445_cov_28832.412195_g404_i0 PRJEB6097 458 445 28832.412195 128304.23426775 Ochromonas danica 2986 SAR_Eukaryotes SAR_Eukaryotes 119 8.63e-30   NR NP_066421.1 2986 g404 i0 77.8 0.485393258426966 72 16 48.5 0 3 218 190 261 NP_066421.1 ribosomal protein L2 [Ochromonas danica] diamond 216 119 1 Eukaryota Sar     Chrysophyceae Chromulinales Chromulinaceae Ochromonas Ochromonas danica
26780547 26780547 PRJEB6097_S_NODE_6661_length_153_cov_2.372881_g6607_i0 PRJEB6097 6661 153 2.372881 3.63050793 Ochromonadaceae sp. CCMP2298 483371 SAR_Eukaryotes SAR_Eukaryotes 41.6 0.0251   NR KAJ1425508.1 483371 g6607 i0 76.7 0.588235294117647 30 7 58.8 0 151 62 188 217 KAJ1425508.1 ribosomal protein S6, partial [Ochromonadaceae sp. CCMP2298] diamond 90 41.6 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298
28391685 28391685 PRJEB6097_S_NODE_6806_length_150_cov_1.513043_g6752_i0 PRJEB6097 6806 150 1.513043 2.2695645 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 82 2.85e-19   NR MES1911722.1 1215613 g6752 i0 75 0.96 48 12 96 0 146 3 1 48 MES1911722.1 hypothetical protein [Cercozoa sp. M6MM] diamond 144 82 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
28896744 28896744 PRJEB6097_S_NODE_5588_length_197_cov_2.166667_g5534_i0 PRJEB6097 5588 197 2.166667 4.26833399 Ochromonadaceae sp. CCMP2298 483371 SAR_Eukaryotes SAR_Eukaryotes 68.2 1.45e-12   NR KAJ1401815.1 483371 g5534 i0 84.6 1.18781725888325 39 6 59.4 0 1 117 102 140 KAJ1401815.1 ubiquitin-related domain-containing protein [Ochromonadaceae sp. CCMP2298] diamond 234 68.2 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298
31582353 31582353 PRJEB6097_S_NODE_5956_length_176_cov_1.602837_g5902_i0 PRJEB6097 5956 176 1.602837 2.82099312 Ochromonadaceae sp. CCMP2298 483371 SAR_Eukaryotes SAR_Eukaryotes 60.5 2.95e-10   NR KAJ1422858.1 483371 g5902 i0 81.8 0.5625 33 6 56.3 0 176 78 50 82 KAJ1422858.1 ribosomal protein S27 [Ochromonadaceae sp. CCMP2298] diamond 99 60.5 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;