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contig_metadata

20 rows where bioproject = "PRJEB6055" and tax_phylum = "Streptophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 20 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB6055 · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
125527 125527 PRJEB6055_S_NODE_1721_length_229_cov_1.134021_g1697_i0 PRJEB6055 1721 229 1.134021 2.59690809 Populus trichocarpa 3694 Plants Plants 217 6.85e-52   NTclustered gi|2396430170|ref|XM_006370104.3| 3694 g1697 i0 87 1.75982532751092 200 16 83 7 1 190 479 678 PREDICTED: Populus trichocarpa olee1-like protein (LOC18095502), mRNA blastn 403 217 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malpighiales Salicaceae Populus Populus trichocarpa
2675606 2675606 PRJEB6055_S_NODE_1503_length_239_cov_6.274510_g1479_i0 PRJEB6055 1503 239 6.27451 14.9960789 Brachypodium distachyon 15368 Plants Plants 213 9.31e-51   NTclustered gi|554786685|dbj|AK424354.1| 15368 g1479 i0 87.845 0.757322175732218 181 22 76 0 3 183 70 250 Brachypodium distachyon mRNA, clone: PL016C01-A-001_I10 blastn 181 213 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Brachypodium Brachypodium distachyon
7369753 7369753 PRJEB6055_S_NODE_1746_length_228_cov_2.694301_g1722_i0 PRJEB6055 1746 228 2.694301 6.14300628 Salicaceae 3688 Plants Plants 422 1.34e-113   NTclustered gi|2511398409|emb|OX637692.1| 3691 g1722 i0 100 108.982456140351 228 0 100 0 1 228 256387 256614 Populus nigra genome assembly, organelle: mitochondrion blastn 24848 422 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malpighiales Salicaceae Populus Populus nigra
7369754 7369754 PRJEB6055_S_NODE_2446_length_205_cov_2.352941_g2422_i0 PRJEB6055 2446 205 2.352941 4.82352905 root 1 Root_unresolved Root_unresolved 372 1.21e-98   NTclustered gi|1481899845|gb|MH971208.1| 3175 g2422 i0 99.51 94.8634146341463 204 1 99 0 1 204 949 1152 Klebsormidium flaccidum strain Us-1-2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 19447 374 0.994652406417112 Eukaryota   Viridiplantae Streptophyta Klebsormidiophyceae Klebsormidiales Klebsormidiaceae Klebsormidium Klebsormidium flaccidum
10328598 10328598 PRJEB6055_S_NODE_709_length_306_cov_8.708487_g685_i0 PRJEB6055 709 306 8.708487 26.64797022 Hordeum vulgare 4513 Plants Plants 372 1.93e-98   NTclustered gi|326488240|dbj|AK362585.1| 112509 g685 i0 99.51 0.666666666666667 204 1 67 0 1 204 534 737 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2008H07 blastn 204 372 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare
12471242 12471242 PRJEB6055_S_NODE_1350_length_248_cov_5.342723_g1326_i0 PRJEB6055 1350 248 5.342723 13.24995304 Salix 40685 Plants Plants 442 1.1399999999999995e-119   NTclustered gi|1881064953|gb|MT808329.1| 75704 g1326 i0 98.79 100 248 3 100 0 1 248 2586 2833 Salix alba isolate DM300 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 24800 442 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malpighiales Salicaceae Salix Salix alba
12471245 12471245 PRJEB6055_S_NODE_590_length_321_cov_13006.860140_g566_i0 PRJEB6055 590 321 13006.86014 41752.0210494 Magnoliopsida 3398 Plants Plants 464 3.2599999999999995e-126   NTclustered gi|2569531918|ref|NC_081498.1| 35974 g566 i0 99.222 104.660436137072 257 2 80 0 65 321 119322 119066 Santalum album mitochondrion, complete genome blastn 33596 466 0.995708154506438 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Santalales Santalaceae Santalum Santalum album
13745715 13745715 PRJEB6055_S_NODE_4071_length_173_cov_1.478261_g4047_i0 PRJEB6055 4071 173 1.478261 2.55739153 Corylus 13450 Plants Plants 224 2.91e-54   NTclustered gi|2578543229|ref|XM_059607332.1| 13451 g4047 i0 91.071 5.28323699421965 168 12 95 1 9 173 353 186 PREDICTED: Corylus avellana protein SRC1 (LOC132192114), mRNA blastn 914 224 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Betulaceae Corylus Corylus avellana
16702230 16702230 PRJEB6055_S_NODE_4274_length_170_cov_3.770370_g4250_i0 PRJEB6055 4274 170 3.7703700000000002 6.409629 Brachypodium distachyon 15368 Plants Plants 241 2.8300000000000007e-59   NTclustered gi|554786563|dbj|AK440311.1| 15368 g4250 i0 92.982 1.00588235294118 171 3 98 5 1 167 821 986 Brachypodium distachyon mRNA, clone: PL016C01-A-104_M01 blastn 171 241 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Brachypodium Brachypodium distachyon
16702231 16702231 PRJEB6055_S_NODE_4334_length_169_cov_4.902985_g4310_i0 PRJEB6055 4334 169 4.902985 8.28604465 Oryza sativa 4530 Plants Plants 172 1.04e-38   NTclustered gi|116641261|emb|CT836802.1| 39946 g4310 i0 87.333 5.9585798816568 150 19 89 0 20 169 484 335 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA044G19, full insert sequence blastn 1007 172 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
17570109 17570109 PRJEB6055_S_NODE_3914_length_175_cov_3.807143_g3890_i0 PRJEB6055 3914 175 3.807143 6.66250025 Magnoliopsida 3398 Plants Plants 261 2.25e-65   NTclustered gi|6689072|emb|AJ235979.1| 3610 g3890 i0 99.306 82.2914285714286 144 1 82 0 1 144 903 760 Rhamnus cathartica 18S rRNA gene blastn 14401 263 0.992395437262357 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rhamnaceae Rhamnus Rhamnus cathartica
17570110 17570110 PRJEB6055_S_NODE_4994_length_160_cov_9.464000_g4970_i0 PRJEB6055 4994 160 9.464 15.1424 Poaceae 4479 Plants Plants 217 4.45e-52   NTclustered gi|511347561|ref|NC_021372.1| 38686 g4970 i0 100 141.13125 117 0 73 0 29 145 100123 100239 Pharus latifolius chloroplast, complete genome blastn 22581 217 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Pharus Pharus latifolius
20118795 20118795 PRJEB6055_S_NODE_4616_length_165_cov_3.384615_g4592_i0 PRJEB6055 4616 165 3.384615 5.58461475 Taxus 25628 Plants Plants 305 9.59e-79   NTclustered gi|1206255126|ref|NC_035066.1| 25629 g4592 i0 100 99.4666666666667 165 0 100 0 1 165 101897 101733 Taxus baccata chloroplast, complete genome blastn 16412 305 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Cupressales Taxaceae Taxus Taxus baccata
21394343 21394343 PRJEB6055_S_NODE_1617_length_233_cov_2.308081_g1593_i0 PRJEB6055 1617 233 2.308081 5.37782873 Populus 3689 Plants Plants 431 2.2899999999999996e-116   NTclustered gi|1878849222|gb|MT796558.1| 3690 g1593 i0 100 100 233 0 100 0 1 233 4199 4431 Populus x canadensis isolate DM631 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 23300 431 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malpighiales Salicaceae Populus Populus x canadensis
21394348 21394348 PRJEB6055_S_NODE_3717_length_178_cov_6.223776_g3693_i0 PRJEB6055 3717 178 6.223776 11.07832128 Magnoliopsida 3398 Plants Plants 122 1.13e-23   NTclustered gi|2907550926|emb|OZ222503.1| 3516 g3693 i0 100 64.9831460674157 66 0 53 0 83 148 82042 82107 Alnus incana genome assembly, organelle: mitochondrion blastn 11567 122 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Betulaceae Alnus Alnus incana
21802289 21802289 PRJEB6055_S_NODE_3618_length_180_cov_1.951724_g3594_i0 PRJEB6055 3618 180 1.951724 3.5131032 Corylus avellana 13451 Plants Plants 165 1.88e-36   NTclustered gi|2578511177|ref|XM_059593011.1| 13451 g3594 i0 92.5 0.666666666666667 120 2 63 2 1 114 706 824 PREDICTED: Corylus avellana classical arabinogalactan protein 11-like (LOC132180260), mRNA blastn 120 165 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Betulaceae Corylus Corylus avellana
28991914 28991914 PRJEB6055_S_NODE_5748_length_152_cov_1.914530_g5724_i0 PRJEB6055 5748 152 1.91453 2.9100856 Carpinus fangiana 176857 Plants Plants 61.6 1.7e-10   NR KAE8124078.1 176857 g5724 i0 91.9 0.730263157894737 37 3 73 0 16 126 1 37 KAE8124078.1 hypothetical protein FH972_018988 [Carpinus fangiana] diamond 111 61.6 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Betulaceae Carpinus Carpinus fangiana
29363799 29363799 PRJEB6055_S_NODE_649_length_314_cov_2.071685_g625_i0 PRJEB6055 649 314 2.071685 6.5050909 Eukaryota 2759 Plants Plants 53.1 4.45e-6   NR XP_055818756.1 45834 g625 i0 66.7 7.80573248407643 81 25 77.4 1 289 47 69 147 XP_055818756.1 60S acidic ribosomal protein P2B-like [Solanum dulcamara] diamond 2451 53.1 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum dulcamara
29844076 29844076 PRJEB6055_S_NODE_2911_length_193_cov_2.398734_g2887_i0 PRJEB6055 2911 193 2.398734 4.62955662 Sphenostylis stenocarpa 92480 Plants Plants 74.7 9.92e-14   NR CAJ1971540.1 92480 g2887 i0 65.5 4.29015544041451 55 19 85.5 0 193 29 400 454 CAJ1971540.1 unnamed protein product [Sphenostylis stenocarpa] diamond 828 74.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Sphenostylis Sphenostylis stenocarpa
29907408 29907408 PRJEB6055_S_NODE_731_length_304_cov_3.758364_g707_i0 PRJEB6055 731 304 3.758364 11.42542656 Rhamnella rubrinervis 2594499 Plants Plants 49.7 2.64e-4   NR KAF3449793.1 2594499 g707 i0 41.4 0.690789473684211 70 28 69.1 3 94 303 301 357 KAF3449793.1 hypothetical protein FNV43_RR05871 [Rhamnella rubrinervis] diamond 210 49.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rhamnaceae Rhamnella Rhamnella rubrinervis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;