RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB6055" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB6055 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
125525 125525 PRJEB6055_S_NODE_1661_length_231_cov_4.734694_g1637_i0 PRJEB6055 1661 231 4.734694 10.93714314 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 387 4.98e-103   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g1637 i0 100 99.051948051948 209 0 90 0 1 209 2352 2144 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 22881 387 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
15020106 15020106 PRJEB6055_S_NODE_452_length_344_cov_10776.411003_g428_i0 PRJEB6055 452 344 10776.411003 37070.85385032 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 508 1.6099999999999997e-139   NTclustered gi|50261276|ref|NC_005984.1| 4770 g428 i0 99.288 89.5988372093023 281 2 82 0 64 344 7475 7195 Saprolegnia ferax mitochondrion, complete genome blastn 30822 510 0.996078431372549 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia ferax
16702236 16702236 PRJEB6055_S_NODE_994_length_276_cov_14951.746888_g970_i0 PRJEB6055 994 276 14951.746888 41266.82141088 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 84.7 1.91e-18   NR CCI43029.1 65357 g970 i0 58.7 7.76086956521739 63 26 68.5 0 255 67 1 63 CCI43029.1 unnamed protein product [Albugo candida] diamond 2142 84.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
31986500 31986500 PRJEB6055_S_NODE_2258_length_210_cov_1.537143_g2234_i0 PRJEB6055 2258 210 1.537143 3.2280003 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 76.3 1.7e-15   NR XP_008610472.1 1156394 g2234 i0 74.4 2.47142857142857 43 11 61.4 0 3 131 107 149 XP_008610472.1 30S ribosomal protein S18e [Saprolegnia diclina VS20] diamond 519 76.3 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;