RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB6055" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB6055 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7778032 7778032 PRJEB6055_S_NODE_227_length_416_cov_5.225722_g205_i0 PRJEB6055 227 416 5.225722 21.73900352 Protostelium mycophagum 472931 Evosea other_Eukaryota 84.2 1.42e-11   NTclustered gi|262262904|gb|FJ766447.1| 472931 g205 i0 77.124 16.6754807692308 153 29 36 4 267 416 1298 1149 Protostelium mycophagum strain HI06-7A-1 small subunit ribosomal RNA gene, partial sequence blastn 6937 84.2 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
7778042 7778042 PRJEB6055_S_NODE_4527_length_166_cov_6.717557_g4503_i0 PRJEB6055 4527 166 6.717557 11.15114462 Heterostelium album 2086695 Evosea other_Eukaryota 163 6.16e-36   NTclustered gi|1160565032|ref|XM_020583308.1| 670386 g4503 i0 84.337 96.6204819277108 166 26 100 0 1 166 1032 867 Polysphondylium pallidum PN500 actin (act10), partial mRNA blastn 16039 163 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;