RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJEB6055" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 7 ✖

tax_clade 1

bioproject 1

  • PRJEB6055 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
992278 992278 PRJEB6055_S_NODE_101_length_527_cov_174.506098_g80_i0 PRJEB6055 101 527 174.506098 919.64713646 Sessilida 1974272 SAR_Eukaryotes SAR_Eukaryotes 778 0   NTclustered gi|2304601486|gb|OP458307.1| 2582953 g80 i0 97.174 79.2371916508539 460 13 87 0 68 527 1 460 Opercularia sp. ZhW-2019a large subunit ribosomal RNA gene, partial sequence blastn 41758 780 0.997435897435897 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Operculariidae Opercularia Opercularia sp. ZhW-2019a
4820219 4820219 PRJEB6055_S_NODE_1084_length_267_cov_15261.000000_g1060_i0 PRJEB6055 1084 267 15261 40746.87 root 1 Root_unresolved Root_unresolved 326 1.3e-84   NTclustered gi|10832|emb|X54512.1| 5911 g1060 i0 94.762 76.2958801498127 210 9 78 2 1 208 8115 8324 T. thermophila rdn A+ gene for pre-RNA, 17S rRNA, 5.8S rRNA, 26S rRNA blastn 20371 326 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
6095420 6095420 PRJEB6055_S_NODE_2865_length_194_cov_4.830189_g2841_i0 PRJEB6055 2865 194 4.830189 9.37056666 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 230 7.21e-56   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g2841 i0 88.205 73.2783505154639 195 19 100 3 1 194 2374 2565 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 14216 230 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
13745709 13745709 PRJEB6055_S_NODE_1031_length_272_cov_14875.468354_g1007_i0 PRJEB6055 1031 272 14875.468354 40461.27392288 root 1 Root_unresolved Root_unresolved 337 6.15e-88   NTclustered gi|10832|emb|X54512.1| 5911 g1007 i0 94.907 76.0441176470588 216 9 79 2 59 272 8330 8115 T. thermophila rdn A+ gene for pre-RNA, 17S rRNA, 5.8S rRNA, 26S rRNA blastn 20684 337 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
16294930 16294930 PRJEB6055_S_NODE_1013_length_274_cov_15614.815900_g989_i0 PRJEB6055 1013 274 15614.8159 42784.595566 root 1 Root_unresolved Root_unresolved 394 3.63e-105   NTclustered gi|10832|emb|X54512.1| 5911 g989 i0 99.537 70.4379562043796 216 1 79 0 1 216 8115 8330 T. thermophila rdn A+ gene for pre-RNA, 17S rRNA, 5.8S rRNA, 26S rRNA blastn 19300 394 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
17570114 17570114 PRJEB6055_S_NODE_714_length_305_cov_12186.281481_g690_i0 PRJEB6055 714 305 12186.281481 37168.15851705 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 388 1.91e-103   NTclustered gi|1837628855|gb|MN158348.1| 5909 g690 i0 96.203 73.4032786885246 237 9 78 0 69 305 2967 2731 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 22388 388 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata
31638550 31638550 PRJEB6055_S_NODE_1856_length_224_cov_2.465608_g1832_i0 PRJEB6055 1856 224 2.465608 5.52296192 root 1 Root_unresolved Root_unresolved 48.1 3.59e-4   NR TNV73783.1 5974 g1832 i0 36.5 1.79464285714286 63 40 84.4 0 219 31 151 213 TNV73783.1 hypothetical protein FGO68_gene10777 [Halteria grandinella] diamond 402 48.1 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Halteriidae Halteria Halteria grandinella

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;