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contig_metadata

8 rows where bioproject = "PRJEB6055", tax_phylum = "Chordata" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 8 ✖

tax_phylum 1

  • Chordata · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB6055 · 8 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2675610 2675610 PRJEB6055_S_NODE_1703_length_229_cov_573.432990_g1679_i0 PRJEB6055 1703 229 573.43299 1313.1615471 Mus musculus 10090 Chordata Chordata 412 8.13e-111   NTclustered gi|74143438|dbj|AK149298.1| 10090 g1679 i0 100 115.960698689956 223 0 97 0 4 226 2325 2547 Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930014N08 product:Warning: possibly chimeric clone, full insert sequence blastn 26555 412 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
7778035 7778035 PRJEB6055_S_NODE_267_length_402_cov_551.051771_g243_i0 PRJEB6055 267 402 551.051771 2215.22811942 Mus musculus 10090 Chordata Chordata 414 4.27e-111   NTclustered gi|74143438|dbj|AK149298.1| 10090 g243 i0 100 123.024875621891 224 0 83 0 4 227 2325 2548 Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930014N08 product:Warning: possibly chimeric clone, full insert sequence blastn 49456 414 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
9920468 9920468 PRJEB6055_S_NODE_2248_length_210_cov_6.474286_g2224_i0 PRJEB6055 2248 210 6.474286 13.5960006 root 1 Root_unresolved Root_unresolved 54.7 0.005   NTclustered gi|1196716666|ref|XR_002394007.1| 10181 g2224 i0 100 5.71904761904762 29 0 14 0 182 210 10 38 PREDICTED: Heterocephalus glaber uncharacterized LOC110348636 (LOC110348636), transcript variant X15, ncRNA blastn 1201 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Bathyergidae Heterocephalus Heterocephalus glaber
11603969 11603969 PRJEB6055_S_NODE_2530_length_202_cov_2.077844_g2506_i0 PRJEB6055 2530 202 2.077844 4.19724488 Mus musculus 10090 Chordata Chordata 209 9.86e-50   NTclustered gi|2904935057|gb|PQ737980.1| 10090 g2506 i0 85.714 1.0049504950495 203 23 99 6 4 202 214 14 Mus musculus lncRNA390 lncRNA, complete sequence blastn 203 209 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
13745714 13745714 PRJEB6055_S_NODE_4051_length_173_cov_7.123188_g4027_i0 PRJEB6055 4051 173 7.123188 12.32311524 root 1 Root_unresolved Root_unresolved 52.8 0.015   NTclustered gi|145046456|gb|AC192790.3| 9031 g4027 i0 100 1.31791907514451 28 0 16 0 2 29 35642 35615 Gallus gallus BAC clone CH261-37L5 from chromosome z, complete sequence blastn 228 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
14153948 14153948 PRJEB6055_S_NODE_192_length_440_cov_561.535802_g170_i0 PRJEB6055 192 440 561.535802 2470.7575288 Mus musculus 10090 Chordata Chordata 414 4.71e-111   NTclustered gi|74143438|dbj|AK149298.1| 10090 g170 i0 100 118.309090909091 224 0 99 0 214 437 2548 2325 Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930014N08 product:Warning: possibly chimeric clone, full insert sequence blastn 52056 414 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
16294931 16294931 PRJEB6055_S_NODE_1133_length_263_cov_50.144737_g1109_i0 PRJEB6055 1133 263 50.144737 131.88065831 root 1 Root_unresolved Root_unresolved 62.1 3.99e-5   NTclustered gi|1196716660|ref|XR_002394001.1| 10181 g1109 i0 95 14.7034220532319 40 1 15 1 1 39 46 7 PREDICTED: Heterocephalus glaber uncharacterized LOC110348636 (LOC110348636), transcript variant X9, ncRNA blastn 3867 62.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Bathyergidae Heterocephalus Heterocephalus glaber
20526501 20526501 PRJEB6055_S_NODE_917_length_282_cov_14783.449393_g893_i0 PRJEB6055 917 282 14783.449393 41689.32728826 Mus musculus 10090 Chordata Chordata 394 3.75e-105   NTclustered gi|74143438|dbj|AK149298.1| 10090 g893 i0 100 90.2375886524823 213 0 76 0 67 279 2537 2325 Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930014N08 product:Warning: possibly chimeric clone, full insert sequence blastn 25447 394 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;