RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB6055", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB6055 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15427959 15427959 PRJEB6055_S_NODE_833_length_292_cov_13739.996109_g809_i0 PRJEB6055 833 292 13739.996109 40120.78863828 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 222 1.95e-53   NTclustered gi|2874253692|emb|OY969418.1| 171953 g809 i0 84.188 94.0993150684932 234 32 80 5 60 292 4233745 4233974 MAG: uncultured Acidobacteriota bacterium isolate MFD09212.bin.c.1 genome assembly, chromosome: 1 blastn 27477 222 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
19251106 19251106 PRJEB6055_S_NODE_796_length_296_cov_10.149425_g772_i0 PRJEB6055 796 296 10.149425 30.042298 Acidobacteriota bacterium 1978231 Bacteria Bacteria 399 8.519999999999998e-107   NTclustered gi|1958093598|gb|CP065003.1| 1978231 g772 i0 91.186 101.277027027027 295 25 99 1 3 296 317542 317248 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.185_cln chromosome, complete genome blastn 29978 399 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
20526504 20526504 PRJEB6055_S_NODE_997_length_276_cov_7.033195_g973_i0 PRJEB6055 997 276 7.033195 19.4116182 Edaphobacter sp. 4G125 2763071 Bacteria Bacteria 54.7 0.007   NTclustered gi|1895667655|gb|CP060393.1| 2763071 g973 i0 100 0.105072463768116 29 0 11 0 42 70 3779290 3779318 Edaphobacter sp. 4G125 chromosome, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Edaphobacter Edaphobacter sp. 4G125
24351381 24351381 PRJEB6055_S_NODE_4800_length_163_cov_0.960938_g4776_i0 PRJEB6055 4800 163 0.960938 1.56632894 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 206 9.86e-49   NTclustered gi|2874254027|emb|OY970352.1| 171953 g4776 i0 95.349 18.0184049079755 129 6 79 0 31 159 2367503 2367631 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.5 genome assembly, chromosome: 1 blastn 2937 206 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;