RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB6055", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJEB6055 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21802279 21802279 PRJEB6055_S_NODE_1858_length_224_cov_1.783069_g1834_i0 PRJEB6055 1858 224 1.783069 3.99407456 Fluviispira sanaruensis 2493639 Bacteria Bacteria 52.8 0.02   NTclustered gi|1566193515|dbj|AP019368.1| 2493639 g1834 i0 90.244 0.875 41 3 18 1 135 174 398815 398775 Silvanigrellales bacterium RF1110005 DNA, complete genome blastn 196 52.8 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Fluviispira Fluviispira sanaruensis
25218351 25218351 PRJEB6055_S_NODE_300_length_389_cov_4.581921_g276_i0 PRJEB6055 300 389 4.581921 17.82367269 Bacteriovorax 146784 Bacteria Bacteria 370 9.03e-98   NTclustered gi|1700689994|gb|CP030035.1| 960 g276 i0 84.103 200.13881748072 390 54 99 8 4 389 1660732 1660347 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 77854 370 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;