RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB6055", tax_clade = "Opisthokonta" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJEB6055 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29181228 29181228 PRJEB6055_S_NODE_5849_length_151_cov_2.051724_g5825_i0 PRJEB6055 5849 151 2.051724 3.09810324 Quaeritorhiza haematococci 2654861 Fungi Fungi 65.9 7.12e-11   NR KAJ3077812.1 2654861 g5825 i0 65.9 0.874172185430464 44 15 87.4 0 149 18 270 313 KAJ3077812.1 hypothetical protein HK102_004949 [Quaeritorhiza haematococci] diamond 132 65.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes   Quaeritorhizaceae Quaeritorhiza Quaeritorhiza haematococci
29622595 29622595 PRJEB6055_S_NODE_2050_length_217_cov_3.620879_g2026_i0 PRJEB6055 2050 217 3.620879 7.85730743 Polyrhizophydium stewartii 2732419 Fungi Fungi 95.9 5.230000000000001e-21   NR KAL2917375.1 2732419 g2026 i0 68.5 0.746543778801843 54 17 74.7 0 217 56 776 829 KAL2917375.1 translation elongation factor 2 [Polyrhizophydium stewartii] diamond 162 95.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Polyrhizophydium Polyrhizophydium stewartii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;