RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB6055", tax_clade = "Opisthokonta" and tax_phylum = "Annelida"

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tax_superkingdom 1

tax_phylum 1

  • Annelida · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJEB6055 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2675632 2675632 PRJEB6055_S_NODE_683_length_309_cov_12166.653285_g659_i0 PRJEB6055 683 309 12166.653285 37594.95865065 Platynereis dumerilii 6359 Annelida Annelida 76.8 1.71e-9   NTclustered gi|440586614|emb|HE971740.1| 6359 g659 i0 97.778 14.3009708737864 45 0 14 1 1 44 2 46 Platynereis dumerilii mRNA for RRM domain protein Musashi (musashi gene) blastn 4419 76.8 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Phyllodocida Nereididae Platynereis Platynereis dumerilii
6095418 6095418 PRJEB6055_S_NODE_2705_length_197_cov_21877.691358_g2681_i0 PRJEB6055 2705 197 21877.691358 43099.05197526 root 1 Root_unresolved Root_unresolved 73.1 1.31e-8   NTclustered gi|440586614|emb|HE971740.1| 6359 g2681 i0 97.619 22.3857868020305 42 1 21 0 156 197 43 2 Platynereis dumerilii mRNA for RRM domain protein Musashi (musashi gene) blastn 4410 73.1 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Phyllodocida Nereididae Platynereis Platynereis dumerilii
15020104 15020104 PRJEB6055_S_NODE_2612_length_199_cov_21615.981707_g2588_i0 PRJEB6055 2612 199 21615.981707 43015.80359693 root 1 Root_unresolved Root_unresolved 73.1 1.33e-8   NTclustered gi|440586614|emb|HE971740.1| 6359 g2588 i0 97.619 22.1206030150754 42 1 21 0 1 42 2 43 Platynereis dumerilii mRNA for RRM domain protein Musashi (musashi gene) blastn 4402 73.1 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Phyllodocida Nereididae Platynereis Platynereis dumerilii
22669172 22669172 PRJEB6055_S_NODE_1698_length_229_cov_18287.561856_g1674_i0 PRJEB6055 1698 229 18287.561856 41878.51665024 root 1 Root_unresolved Root_unresolved 73.1 1.57e-8   NTclustered gi|440586614|emb|HE971740.1| 6359 g1674 i0 97.619 19.1441048034934 42 1 18 0 1 42 2 43 Platynereis dumerilii mRNA for RRM domain protein Musashi (musashi gene) blastn 4384 73.1 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Phyllodocida Nereididae Platynereis Platynereis dumerilii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;