RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB6055", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJEB6055 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5228084 5228084 PRJEB6055_S_NODE_1625_length_232_cov_16626.888325_g1601_i0 PRJEB6055 1625 232 16626.888325 38574.380914 Cochliopodium minus 313997 Discosea other_Eukaryota 287 5.22e-73   NTclustered gi|330902862|gb|JF298257.1| 313997 g1601 i0 98.171 25.801724137931 164 3 71 0 3 166 7 170 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 5986 287 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
7778048 7778048 PRJEB6055_S_NODE_7_length_1135_cov_12.217273_g4_i0 PRJEB6055 7 1135 12.217273 138.66604855 Paravannella minima 1443144 Discosea other_Eukaryota 111 1.88e-19   NTclustered gi|1583105587|ref|NC_040955.1| 1443144 g4 i0 75.862 10.0643171806167 232 48 20 8 1 228 3750 3523 Paravannella minima mitochondrion, complete genome blastn 11423 111 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
16702233 16702233 PRJEB6055_S_NODE_4794_length_163_cov_1.562500_g4770_i0 PRJEB6055 4794 163 1.5625 2.546875 Cochliopodium actinophorum 703021 Discosea other_Eukaryota 296 5.68e-76   NTclustered gi|330902844|gb|JF298248.1| 703021 g4770 i0 99.39 94.6257668711656 164 0 100 1 1 163 284 447 Cochliopodium actinophorum clone 1206 18S ribosomal RNA gene, partial sequence blastn 15424 296 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium actinophorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;